Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5723
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 591 KKLLASKHTETSYEVVAHPHHEEHYASSGH 680
           +KLLA K TE   ++ A   H++    + H
Sbjct: 404 EKLLAFKMTEQQQQMQAQQQHQQQQQQTQH 433


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 514 PKNRGMRAMIFSLAMAKRGRSCLIFFF 434
           P+NR     +++LA  + G + L+F F
Sbjct: 29  PQNRSQEEDLWNLATDRAGLAILLFLF 55


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 642 HPHHEEHYASSGH 680
           H HH  H+A  GH
Sbjct: 280 HVHHANHHAILGH 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 657  EHYASSGHGWGRSIDDAQNMAYS 725
            +HY S G    RS+  A+N+  S
Sbjct: 1832 DHYGSRGSVGRRSVGSARNIPVS 1854


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,577
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)