Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5719
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    28   1.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.0  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   5.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.7  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    25   8.8  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -2

Query: 584 MFVYRAINRCNDNSSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAP 405
           +FV    +      SV   ++ G    +   +  KA++++ RR P + +  L+R + I P
Sbjct: 62  IFVRACSSNVMKRPSVVKSRKKGSENISNFMEKTKAIKQKSRREPSKFERSLARPLCITP 121


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 503 ARTKKVVKAVRERIRRNPVRKQNILSREIKI--APRTM 396
           AR  ++V  +R+R  R+P  +Q++ SR + I   P TM
Sbjct: 172 ARYYQIVMRIRQRYYRSPTYQQSMSSRSLLIMDIPTTM 209


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -2

Query: 494 KKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTGHFLTDNLKE 315
           ++VV+ + +RI    +   + L+  +KI PR +S I+       AY   T  +  D+ K+
Sbjct: 200 EEVVEKIAKRIGFTDISLSSKLTPMVKIVPRAVSAIID------AYLSSTLRYYLDSFKK 253

Query: 314 N 312
           N
Sbjct: 254 N 254


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -2

Query: 494 KKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTGHFLTDNLKE 315
           +K+ K + +++R N   + +I   ++KIA    ++I  DD+     K + G   T+ LK 
Sbjct: 740 EKMRKEIVQQVRDNEEIEVHINELDVKIALLVKNKISLDDVLKHHNKYKFGKQSTEYLKI 799

Query: 314 N 312
           N
Sbjct: 800 N 800


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 269 PLHTASVVVSILPPYSLLNYQLRNDQYVSYRLQVLSHLLKY 391
           P   ASV++ ++  +   N  +R DQY+   L+ +S +L Y
Sbjct: 226 PCKHASVLLKLIKQHRERNDPIRVDQYMVLFLKFVSTMLPY 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,495
Number of Sequences: 5004
Number of extensions: 68466
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)