Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5719
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    35   0.080
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162...    30   2.3  
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794...    28   7.0  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    28   9.2  
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    28   9.2  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = -2

Query: 494 KKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTGHFLTDNLKE 315
           KKV K++RE  +RN +     L++E+  + + ++R+ ++  +L +     G  +      
Sbjct: 56  KKVEKSIREAAKRNDIGSAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTV 115

Query: 314 NRVVKSKQLLK 282
             + KS +++K
Sbjct: 116 GHLSKSTEVMK 126


>02_05_0710 -
           31115116-31115214,31115747-31115851,31116210-31116260,
           31116393-31116494,31116651-31116883,31117306-31117497,
           31118142-31118322,31118424-31118623,31119105-31119645
          Length = 567

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 532 SQTEELSLHLLIARYTNILLIP----SVWR-VLKFAFGSIPTLCNAITAIRFSLSPHSIL 696
           S T+ L+  L I    +I L+       W  VL   FGS+P L +A+T + + +   +I 
Sbjct: 163 SDTKYLATVLAIGTECDIALLTVDDDEFWEGVLPVEFGSLPALQDAVTVVGYPIGGDTIS 222

Query: 697 ISQNIVQCI 723
           ++  +V  I
Sbjct: 223 VTSGVVSRI 231


>01_06_1257 -
           35778078-35778299,35778952-35779069,35779294-35779433,
           35779763-35779864,35779971-35780051,35780333-35780402,
           35781053-35781114,35781789-35782183,35782303-35782386,
           35782949-35783041,35783144-35783195,35783310-35783376,
           35783492-35783550,35784209-35784256,35784927-35785040,
           35785162-35785335,35785417-35785944,35786025-35786094,
           35786668-35786711
          Length = 840

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 233 TDENFFTIEQYFNKQNDRIYAQSSEEASQLVDRVQRGHYP 114
           +D+ F+ +E+    Q   +   +  ++   VD  Q GHYP
Sbjct: 155 SDDEFYDVEKVDPNQEGPVADSADADSGMNVDANQEGHYP 194


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 532 SQTEELSLHLLIARYTNILLIP----SVWR-VLKFAFGSIPTLCNAITAIRFSLSPHSIL 696
           S T+ L+  L I    +I ++       W+ V    FGS+P L +A+T + + +   +I 
Sbjct: 224 SDTKYLATVLAIGTECDIAMLTVEDDEFWKGVSPLEFGSLPALQDAVTVVGYPIGGDTIS 283

Query: 697 ISQNIVQCI 723
           ++  +V  I
Sbjct: 284 VTSGVVSRI 292


>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 257 KGRTPLHTASVVVSILPPYSLLNYQLRNDQY--VSYRLQVLSHLLKYA 394
           + + P      +++I+P Y +LN+ L    Y  VS+RL  L++ LK A
Sbjct: 423 RSKVPNGQPKWLLTIIPNYPMLNFMLTTAIYVAVSHRLFELTNTLKIA 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,704,947
Number of Sequences: 37544
Number of extensions: 386420
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)