Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5719
(756 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X55039-1|CAA38879.1| 599|Homo sapiens centromere autoantigen B ... 31 3.4
BC053847-1|AAH53847.1| 599|Homo sapiens centromere protein B, 8... 31 3.4
AL109804-11|CAC17547.1| 599|Homo sapiens centromere protein B, ... 31 3.4
AF002713-1|AAB70165.1| 125|Homo sapiens centromere protein B pr... 31 3.4
AL035454-2|CAI42112.1| 836|Homo sapiens Crn, crooked neck-like ... 31 5.9
AL035454-1|CAI42113.1| 848|Homo sapiens Crn, crooked neck-like ... 31 5.9
AF318303-1|AAK01925.1| 848|Homo sapiens CGI-201 protein, type I... 31 5.9
AF255443-1|AAF65571.2| 836|Homo sapiens CGI-201 protein protein. 31 5.9
X05299-1|CAA28918.1| 594|Homo sapiens CENP-B protein. 30 7.8
>X55039-1|CAA38879.1| 599|Homo sapiens centromere autoantigen B
(CENP-B) protein.
Length = 599
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 518 GRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTG 342
G R T + + + + NP ++ ++R I P T+S ILK+ + A +R+ G
Sbjct: 2 GPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60
>BC053847-1|AAH53847.1| 599|Homo sapiens centromere protein B,
80kDa protein.
Length = 599
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 518 GRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTG 342
G R T + + + + NP ++ ++R I P T+S ILK+ + A +R+ G
Sbjct: 2 GPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60
>AL109804-11|CAC17547.1| 599|Homo sapiens centromere protein B,
80kDa protein.
Length = 599
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 518 GRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTG 342
G R T + + + + NP ++ ++R I P T+S ILK+ + A +R+ G
Sbjct: 2 GPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60
>AF002713-1|AAB70165.1| 125|Homo sapiens centromere protein B
protein.
Length = 125
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 518 GRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTG 342
G R T + + + + NP ++ ++R I P T+S ILK+ + A +R+ G
Sbjct: 2 GPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 60
>AL035454-2|CAI42112.1| 836|Homo sapiens Crn, crooked neck-like 1
(Drosophila) protein.
Length = 836
Score = 30.7 bits (66), Expect = 5.9
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = -2
Query: 545 SSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQNIL----SREIKIAPRTMSRILKD 378
S+ D S R KV K + + + +L RE+++ P + + D
Sbjct: 145 STAADMAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITD 204
Query: 377 DLRLAAYKRRTGHFLTDNLKENRVVKSKQLLKRYAK 270
+ L YK R DN+++NR V S + +YA+
Sbjct: 205 EEELNDYKLRKRKTFEDNIRKNRTVISNWI--KYAQ 238
>AL035454-1|CAI42113.1| 848|Homo sapiens Crn, crooked neck-like 1
(Drosophila) protein.
Length = 848
Score = 30.7 bits (66), Expect = 5.9
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = -2
Query: 545 SSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQNIL----SREIKIAPRTMSRILKD 378
S+ D S R KV K + + + +L RE+++ P + + D
Sbjct: 157 STAADMAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITD 216
Query: 377 DLRLAAYKRRTGHFLTDNLKENRVVKSKQLLKRYAK 270
+ L YK R DN+++NR V S + +YA+
Sbjct: 217 EEELNDYKLRKRKTFEDNIRKNRTVISNWI--KYAQ 250
>AF318303-1|AAK01925.1| 848|Homo sapiens CGI-201 protein, type II
protein.
Length = 848
Score = 30.7 bits (66), Expect = 5.9
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = -2
Query: 545 SSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQNIL----SREIKIAPRTMSRILKD 378
S+ D S R KV K + + + +L RE+++ P + + D
Sbjct: 157 STAADMAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQRITD 216
Query: 377 DLRLAAYKRRTGHFLTDNLKENRVVKSKQLLKRYAK 270
+ L YK R DN+++NR V S + +YA+
Sbjct: 217 EEELNDYKLRKRKTFEDNIRKNRTVISNWI--KYAQ 250
>AF255443-1|AAF65571.2| 836|Homo sapiens CGI-201 protein protein.
Length = 836
Score = 30.7 bits (66), Expect = 5.9
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = -2
Query: 545 SSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQNIL----SREIKIAPRTMSRILKD 378
S+ D S R KV K + + + +L RE+++ P + + D
Sbjct: 145 STAADMAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQRITD 204
Query: 377 DLRLAAYKRRTGHFLTDNLKENRVVKSKQLLKRYAK 270
+ L YK R DN+++NR V S + +YA+
Sbjct: 205 EEELNDYKLRKRKTFEDNIRKNRTVISNWI--KYAQ 238
>X05299-1|CAA28918.1| 594|Homo sapiens CENP-B protein.
Length = 594
Score = 30.3 bits (65), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 470 ERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKRRTG 342
+ + NP ++ ++R I P T+S ILK+ + A +R+ G
Sbjct: 13 QEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG 55
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,865,764
Number of Sequences: 237096
Number of extensions: 2370713
Number of successful extensions: 5088
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5088
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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