Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5719
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    85   4e-17
U51995-3|AAY86262.1|  174|Caenorhabditis elegans Hypothetical pr...    36   0.031
AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenase...    34   0.095
AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    30   2.0  
U55369-6|ABO16439.1|  476|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical ...    28   8.2  
AC103567-10|AAL35727.1|  159|Caenorhabditis elegans Hypothetical...    28   8.2  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 49/118 (41%), Positives = 67/118 (56%)
 Frame = -2

Query: 362 AYKRRTGHFLTDNLKENRVVKSKQLLKRYAKGSSL*IDRKFLFTDENFFTIEQYFNKQND 183
           AYK+ T  FL++  K  R  ++  LL+R+  G+     RK LFTDE  F IEQ FN QND
Sbjct: 180 AYKKSTCQFLSEAAKIKRKDRAMNLLRRFRNGAH----RKVLFTDEKIFCIEQSFNTQND 235

Query: 182 RIYAQSSEEASQLVDRVQRGHYPTSVMVWWGISYEGVTEPYFCEKGIKTSAQVYQDTI 9
           R+YA++   +     RVQR  YP  +MV+ GI+  G T   F  +GIK +   Y D +
Sbjct: 236 RVYAKTQPNS-----RVQRTGYPKGIMVFAGITANGKTPLIFVPQGIKVNGNNYLDML 288


>U51995-3|AAY86262.1|  174|Caenorhabditis elegans Hypothetical
           protein F07G6.9 protein.
          Length = 174

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 28/83 (33%), Positives = 45/83 (54%)
 Frame = -2

Query: 392 RILKDDLRLAAYKRRTGHFLTDNLKENRVVKSKQLLKRYAKGSSL*IDRKFLFTDENFFT 213
           RI+KD LRL  Y+ R   F+    K  R+ K+K++ +R   G +L I    +F+DE + +
Sbjct: 76  RIVKDKLRLTPYRVRNIFFVFYANKLKRLDKAKRIFRRTHPGENLVI----VFSDE-YCS 130

Query: 212 IEQYFNKQNDRIYAQSSEEASQL 144
            +  F+ QN       S EA+Q+
Sbjct: 131 QKAEFSSQNCGELELRSYEANQI 153


>AC006733-4|AAF60486.1|  319|Caenorhabditis elegans Dehydrogenases,
           short chain protein9 protein.
          Length = 319

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -2

Query: 293 QLLKRYAKGSSL*IDRKFLFTDENFF-TIEQYFNKQNDRIYAQSSEEASQLVDRVQRGHY 117
           ++ KR  KG +  +D + +   +NFF  +E+    Q D +   + +  + + + + +  Y
Sbjct: 58  EITKRGGKGIARFVDHQNMEEVKNFFEVVEKEHQGQLDILVNNAYQGVTAISENMGKPFY 117

Query: 116 PTSVMVWWGISYEGVTEPYFC 54
            T   VW  I+  G+   YFC
Sbjct: 118 ETDPYVWDTINNVGLRNHYFC 138


>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/90 (26%), Positives = 41/90 (45%)
 Frame = -2

Query: 548 NSSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLR 369
           N  + D+ RSGRPR    + + +A+ +    +P      +S  +K    T+   L +  R
Sbjct: 26  NYDLDDKPRSGRPRLDIDEDISRALED----DPRSMSREISATLKRPHTTIINHLHESGR 81

Query: 368 LAAYKRRTGHFLTDNLKENRVVKSKQLLKR 279
           +  + +   H L+D+ K  R   S  LL R
Sbjct: 82  VPKFGQLVPHNLSDSQKNLRCDLSLSLLTR 111


>U55369-6|ABO16439.1|  476|Caenorhabditis elegans Hypothetical
           protein C18C4.1b protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
 Frame = -2

Query: 602 TLGISKMFV-YRAINRCNDN-SSVCDRKRSGRPR-SARTK-KVVKAVRERIRRNPVRKQN 435
           T+G+ KM+  +R     N+  ++V ++ ++   + S + K + + A+ E IR     + +
Sbjct: 5   TVGVGKMYEEFRITQLVNETLTTVIEKVQTNHEKISTKAKPRPLSAINEEIR-----EYD 59

Query: 434 ILSREIKIAPRTMSRILKDDLRLA 363
            LSRE++   R   RI+ DD  LA
Sbjct: 60  QLSRELEKDYRRSMRIVDDDFELA 83


>AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical
           protein ZK250.5a protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = -2

Query: 614 KTLHTLGISKMFVYRAINRCNDNSSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQN 435
           K +H LG  KM++ +  ++  D S       S   +SA      + + E+I ++      
Sbjct: 272 KFIHNLGSEKMYISKLFDKNKDESIETSALTSRPSKSAMLCLSNQLIMEKIVQHFDFADL 331

Query: 434 ILSREIKIAPRTMSRILKDDLRLAA 360
            + R++    R    ILK D +L A
Sbjct: 332 AVLRKVSRGSRQCVDILKPDPKLVA 356


>AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical
           protein ZK250.5b protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/85 (24%), Positives = 37/85 (43%)
 Frame = -2

Query: 614 KTLHTLGISKMFVYRAINRCNDNSSVCDRKRSGRPRSARTKKVVKAVRERIRRNPVRKQN 435
           K +H LG  KM++ +  ++  D S       S   +SA      + + E+I ++      
Sbjct: 479 KFIHNLGSEKMYISKLFDKNKDESIETSALTSRPSKSAMLCLSNQLIMEKIVQHFDFADL 538

Query: 434 ILSREIKIAPRTMSRILKDDLRLAA 360
            + R++    R    ILK D +L A
Sbjct: 539 AVLRKVSRGSRQCVDILKPDPKLVA 563


>AC103567-10|AAL35727.1|  159|Caenorhabditis elegans Hypothetical
           protein Y51F10.1 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/108 (21%), Positives = 44/108 (40%)
 Frame = -2

Query: 530 RKRSGRPRSARTKKVVKAVRERIRRNPVRKQNILSREIKIAPRTMSRILKDDLRLAAYKR 351
           +K SGRP     +   K  R          +      + ++  T+ R+L     +   K 
Sbjct: 52  KKSSGRPPLLSDRDKRKICRRAFNSTVTCSKIKREMNLPVSVETVRRVLSKSQFIKRRKL 111

Query: 350 RTGHFLTDNLKENRVVKSKQLLKRYAKGSSL*IDRKFLFTDENFFTIE 207
           R   F+T+  ++NR+        ++AK +     R+ +F+DE  F  +
Sbjct: 112 RKAPFITEKHRQNRI--------QFAKINQRTNWRQIIFSDEKKFNCD 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,374
Number of Sequences: 27780
Number of extensions: 371066
Number of successful extensions: 1089
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)