Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5719
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.44 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   9.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   9.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   9.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
 Frame = -2

Query: 254 IDRKFLFTDENFFTIEQYFNKQN-------DRIYAQSSEEASQLVDR 135
           +D+KF+F  EN +    +++K N       D ++ Q+ EE  Q ++R
Sbjct: 126 LDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEE-EQTINR 171


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 602 YGEF*NLHLAPYLLCVMQLQRFGSLYHLTPF 694
           YG F    + P++    Q+ RF  +   TPF
Sbjct: 123 YGNFPPRSMGPWISIQEQIPRFRHIGPSTPF 153


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 602 YGEF*NLHLAPYLLCVMQLQRFGSLYHLTPF 694
           YG F    + P++    Q+ RF  +   TPF
Sbjct: 123 YGNFPPRSMGPWISIQEQIPRFRHIGPSTPF 153


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 602 YGEF*NLHLAPYLLCVMQLQRFGSLYHLTPF 694
           YG F    + P++    Q+ RF  +   TPF
Sbjct: 123 YGNFPPRSMGPWISIQEQIPRFRHIGPSTPF 153


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 602 YGEF*NLHLAPYLLCVMQLQRFGSLYHLTPF 694
           YG F    + P++    Q+ RF  +   TPF
Sbjct: 356 YGNFPPRSMGPWISIQEQIPRFRHIGPSTPF 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,255
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)