Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5718
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 404 LHNTIGILLLHQHWQHTED*TCPIEQGFQSS 312
           + N I ++LL  HW        P+ QGF S+
Sbjct: 279 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 309


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 404 LHNTIGILLLHQHWQHTED*TCPIEQGFQSS 312
           + N I ++LL  HW        P+ QGF S+
Sbjct: 247 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSN 277


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 392 WYYEGRNGWWKYDER 436
           WY+  RN  +K D+R
Sbjct: 282 WYWIDRNSAYKIDQR 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,963
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)