Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5716
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999...    28   3.5  
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437...    27   4.6  
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983...    27   6.1  
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995...    27   6.1  
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066...    27   8.1  
01_06_0576 - 30365903-30366328,30367262-30367640,30368215-303684...    27   8.1  

>09_06_0023 -
           20299435-20299528,20299666-20299757,20299873-20299955,
           20300066-20300147,20300235-20300462,20300646-20300747,
           20300834-20300969,20301105-20301514
          Length = 408

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 327 LAATGGMNDFHGSHTNGRVPSVLVPGGIGCLASSLVLPLLE 205
           +AA  G    +G    G   SVLV GG G + +  VL LLE
Sbjct: 7   VAAENGEMVGNGEGRKGAGASVLVTGGAGYIGTHTVLRLLE 47


>01_05_0769 -
          25042022-25042447,25042856-25043234,25043714-25043763,
          25044222-25044442,25045085-25045385
          Length = 458

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 4  WRWWVPRGCRAGLRARAVQ 60
          W WW PR     LRA+ ++
Sbjct: 34 WAWWTPRRLERALRAQGIR 52


>10_08_0923 +
           21597593-21597629,21598089-21598135,21598253-21598391,
           21598449-21598562,21599206-21599432,21599578-21599835,
           21600014-21600304,21600766-21600830,21601116-21601299,
           21601857-21601964
          Length = 489

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 318 TGGMNDFHGSHTNGRV--PSVLVP 253
           T G N+FHGSH N  V  P V +P
Sbjct: 419 TSGENNFHGSHGNKVVSEPKVWIP 442


>02_02_0412 -
           9950286-9950380,9950530-9951203,9951402-9951580,
           9952578-9952633,9953233-9953262,9953820-9953982
          Length = 398

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 335 WLGWRRRAV*TTFTGVIRTA 276
           W GWRR AV T  T   RTA
Sbjct: 35  WCGWRRAAVATAATSSNRTA 54


>02_02_0693 +
           13006243-13006245,13006439-13006501,13006608-13006687,
           13007964-13008072,13009027-13009074,13011044-13011203,
           13011295-13011458,13011549-13011902
          Length = 326

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 339 PLAWLAATGGMNDFHGSH 286
           P  W    GG+N FHG H
Sbjct: 15  PPEWSPKKGGLNKFHGQH 32


>01_06_0576 -
          30365903-30366328,30367262-30367640,30368215-30368459,
          30368819-30369039,30369786-30370074
          Length = 519

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 4  WRWWVPRGCRAGLRARAVQ 60
          W WW PR     LRA+ ++
Sbjct: 30 WAWWTPRRLERALRAQGLR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,784
Number of Sequences: 37544
Number of extensions: 158769
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)