Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5716
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 258 VPGGIGCLASSLVLPLLEYLIA 193
           V  GIG  A  +++PLL YLIA
Sbjct: 216 VAPGIGLFAQFIIMPLLSYLIA 237


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 417 IRHHLRHYYLWWGVPNQYIAAQCSSEPLAW 328
           I H +R    W+G+  +Y+       PL W
Sbjct: 124 IMHEIRDTRPWFGMEQEYLIVDRDEHPLGW 153


>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 185 SSSAIKYSSNGSTNDDARQPIPPGTST 265
           SS A   SSNGS++     P+PP   T
Sbjct: 116 SSVASSSSSNGSSSSTDTSPVPPAPQT 142


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 185 SSSAIKYSSNGSTNDDARQPIPPGTST 265
           SS A   SSNGS++     P+PP   T
Sbjct: 485 SSVASSSSSNGSSSSTDTSPVPPAPQT 511


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 185 SSSAIKYSSNGSTNDDARQPIPPGTST 265
           SS A   SSNGS++     P+PP   T
Sbjct: 495 SSVASSSSSNGSSSSTDTSPVPPAPQT 521


>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 286 MTPVKVVHTARRRQPSQRFAGTLRRDILIRH--PPP 387
           + P  VV   +++Q  Q+  GT+R+  + RH  PPP
Sbjct: 314 VAPGSVVQQQQQQQMQQQNYGTIRKSTVNRHDLPPP 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,576,008
Number of Sequences: 27780
Number of extensions: 104902
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)