Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5715
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    29   0.55 
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   9.0  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 149 ERPKLNLLPRTVPR-ETEAPTKPADGAPLEEKQEKQAPKPVPAEKVFGGAKPVDTAA 316
           ERP+LNL PR+     TEA        P         PK  P    FGGAKPVD  +
Sbjct: 240 ERPRLNLKPRSSSNVNTEA-------TPSATTTTSSKPKRDP----FGGAKPVDNTS 285


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 164 NLLPRTVPRETEAPTKPADGAPLEEKQEKQAPKPVPAEKVFGGAKPV 304
           N  P+++P  +   T+P D   L   QE+ +  P   + V   AK +
Sbjct: 184 NSHPQSLPSNSIPKTEPLDTPSLSNSQERFSKSPSDGQNVRSRAKKI 230


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 173 PRTVPRETEAPTKPADGAPLEEKQEKQAPKPVPAEKVFGGAKPVDTAA 316
           P T P    +P KP     +E+  E +   PVP+ +     KPV T +
Sbjct: 354 PPTSP--LHSPVKPVSNEQVEQVTEVELSIPVPSIQEAESQKPVLTGS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,162
Number of Sequences: 5004
Number of extensions: 25663
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)