Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5714
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    28   1.3  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   5.1  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   8.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 445 NWIHRFAPLADMRSNSIWT 501
           NW+H F+ L    S S WT
Sbjct: 95  NWVHSFSSLQQQNSKSAWT 113


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 400 GLTFLFLPIILDFTGNWIHRFAPLADMRSNS 492
           GLTFL  P+ +   G W  R  P   + SN+
Sbjct: 103 GLTFLGCPVHIGPNGEWAKRRKPRTTVESNA 133


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 183 TIPPPLSPLQTDVPSLYPAQ*VYSDVNLTKN 91
           +IP PL+P  +D  SLYP    +S V   KN
Sbjct: 534 SIPKPLTPKPSDSNSLYPLP--HSKVGRRKN 562


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 143 GTSVCNGDSGGGMVFKFGESWYLRGLV 223
           G  + N   GGG +++FG+++   GLV
Sbjct: 316 GWPMRNDTYGGGFMYQFGDNYVTVGLV 342


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 219 RPLRYQLSP-NLKTIPPPLSPLQTDVPSLYPAQ*VYSDVNLTKNSL*DLMQVSVSTTGIS 43
           + LR+ L P NL+ +   L PL+T   SL  +   Y    L   ++  L QV  S + +S
Sbjct: 130 KKLRFYLEPLNLQWV---LMPLETSAYSLVTSTPAYIQNGLDTFTIAKLRQVYGSNSLVS 186

Query: 42  TRLS 31
           T+ S
Sbjct: 187 TKKS 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,949
Number of Sequences: 5004
Number of extensions: 56871
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)