Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5714
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   5.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 210 SGAWCRSPWPGRTNADV 260
           SG+   SP+PG T AD+
Sbjct: 353 SGSKANSPFPGSTEADI 369


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 248 ECRCDPSHYVVFSDLAK 298
           ECRCDP ++    D  K
Sbjct: 295 ECRCDPGYFRAEKDPKK 311


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 438 YRELDTSFRPPCRHEVELNLD*NNYCAGLRTSFSNL*D 551
           Y+   T+F     +E+  N     +CAG+ T+ +N+ D
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVID 98


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 438 YRELDTSFRPPCRHEVELNLD*NNYCAGLRTSFSNL*D 551
           Y+   T+F     +E+  N     +CAG+ T+ +N+ D
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVID 98


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 289  VAEHYVMAGVTSAFVLPGHGERHQAPEV 206
            VAE   + G     V+PG+G+R   PE+
Sbjct: 1858 VAETTFVGG-NQGNVVPGNGDRSDRPEL 1884


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 289  VAEHYVMAGVTSAFVLPGHGERHQAPEV 206
            VAE   + G     V+PG+G+R   PE+
Sbjct: 1854 VAETTFVGG-NQGNVVPGNGDRSDRPEL 1880


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 424 LVKTKRSNQFQKANFHFRFI 365
           L+     NQ  K+N   RFI
Sbjct: 63  LINVNEKNQIMKSNVWLRFI 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,186
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)