Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5709
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    34   0.018
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    28   1.2  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   2.7  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   6.1  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   8.1  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 18/86 (20%), Positives = 42/86 (48%)
 Frame = +3

Query: 57  YIQSVEICAVLITMAGLNIAEWTADQVAEWMSGLDASVAQYVPQMRAKGLNGTRLLMLRC 236
           YI++    ++ ++    N+  W+ ++V EW+  ++A +    P      + G  LL L  
Sbjct: 229 YIENRPASSLAVSEKIQNVPNWSTEEVVEWL--MNAGLGSVAPNFAENEITGEILLGLDS 286

Query: 237 DDLEYLGMHIIGHQELLLEAVEHLRN 314
           + L+ L +   G +  +L  ++ L++
Sbjct: 287 NVLKELNITSFGKRFEVLRKIQQLKD 312


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 292 SSKSSWCPMICMPKYSKSSHLNINNLVPFKPLARICGTYWATDASSP 152
           S +S++ P +  P Y     +  N   PF P+       W   AS+P
Sbjct: 254 SKQSTYWPALAAPVYPSMKDVPNNPFTPFSPINPYYAKSWNHTASAP 300


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 KKYPSIRNMQIFYILNVYKSHNKL 455
           KKYP I   +I Y+LN+Y + N +
Sbjct: 502 KKYPGIVWERIHYVLNIYTTINSV 525


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 703 LPLIHLNFDLLPAILKLFQMISIGKQ*LCK 614
           L L H+++D+ P ILKL + ++   + LCK
Sbjct: 418 LSLPHVHWDVDPFILKLSEELTQNSETLCK 447


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 610 SPNINKLPKLQLANI 566
           SPNIN +P LQLA+I
Sbjct: 406 SPNINIVPPLQLADI 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,939
Number of Sequences: 5004
Number of extensions: 57008
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)