Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5709
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0690 - 35571816-35572586                                         29   2.8  
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296...    29   2.8  
01_05_0362 - 21388520-21389827                                         29   3.7  
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277...    28   8.5  

>03_06_0690 - 35571816-35572586
          Length = 256

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 135 VAEWMSGLDASVAQYVPQMRAKGLNGTRLLMLRCDDLEYLGMHIIGHQELLLEAVEHLR 311
           V  W+ GL  S  +Y P      ++   L +L  +DL+ +G+  +G +  L  A++ L+
Sbjct: 194 VKAWLDGLGLS--RYAPVFEIHEVDDEVLPLLTLEDLKDMGIGAVGSRRKLYAAIQKLQ 250


>02_05_0583 +
           30128795-30129158,30129342-30129505,30129602-30129665,
           30130082-30130215,30130369-30130452,30130580-30130654,
           30130734-30130805,30130892-30130965,30131217-30131269,
           30131388-30131497,30131824-30131892,30131975-30132049,
           30132449-30132508,30132555-30132647,30132718-30132797,
           30132877-30132976,30133153-30133590
          Length = 702

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 357 FLTHLAKTVKKYPSIRNMQIFYILNVYKSHNKLSIA 464
           F T L KT + YP + NM  F++  + K  N + +A
Sbjct: 533 FHTSLDKTRRFYPHVNNMDGFFVAKLKKLSNTIPVA 568


>01_05_0362 - 21388520-21389827
          Length = 435

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 208 FKPLARICGTYW--ATDASSPDIHSATWSAVHSAIFNPAIVIS 86
           +K + R CGT+W   T A   D  ++ WSA+       A+V++
Sbjct: 379 YKDVDRYCGTWWRRKTAALRRDYFASPWSAISFVAAAVAVVLA 421


>09_06_0199 +
           21526872-21527250,21527431-21527594,21527673-21527736,
           21528001-21528134,21528302-21528385,21528526-21528600,
           21528683-21528754,21528852-21528925,21529185-21529282,
           21529355-21529464,21529794-21529862,21529944-21530018,
           21530519-21530611,21530690-21530769,21530877-21530976,
           21531150-21531586,21531676-21531706,21532873-21533822,
           21533982-21534201
          Length = 1102

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 357 FLTHLAKTVKKYPSIRNMQIFYILNVYKSHNKLSI 461
           F T L KT + YP + NM  F++  + K  N + +
Sbjct: 533 FHTSLDKTRRFYPHVNNMDGFFVAKLKKLSNTIPV 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,473
Number of Sequences: 37544
Number of extensions: 315818
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)