Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5709
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.71 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = -2

Query: 214 VPFKPLARICG---TYWATDASSPDIHSATWS 128
           VPF     +C    T+W  D  +  IH A+WS
Sbjct: 150 VPFTTYTPVCEYDHTWWPYDILNCTIHIASWS 181


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 28  LFLFHNKIKNIFNQLKYAQCLLQWLD*ILLNGLRTK*LNGC 150
           L + H  I+N   QL Y Q L  W+   L     T+ +N C
Sbjct: 93  LHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQRINSC 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,529
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)