Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5704
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    28   0.99 
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   1.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   5.3  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.2  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 351 SQEVLPPVVEFDLSNKNAVLRSVNRQIYK*TRLEFSENYIH 473
           S+EV+ PV   DLS+KN  +RSV R I   T ++  EN+++
Sbjct: 143 SEEVIRPVD--DLSSKNMYIRSVTRVITPGTLID--ENFMN 179


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +1

Query: 193 KPIDIQNVN--APPP*DISS--KVSSIVTTAAPPFKPKRITASRQ 315
           +P+ ++N +  +PP  D  S  K SSI+  + PPF+ + IT S +
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTE 644


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 151 GGRAHSPTGVKWLLKP 198
           GG  H P  V WLL+P
Sbjct: 235 GGPLHDPNTVMWLLRP 250


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 275 PHPSNRNALLLHGRNRQSGGTYP 343
           PHP N   +LL G N Q+  + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 507 LNLYIYVTESLYVYNFH*IQVLFTCKFADLPILIRHFYYLDQIQLLVVR 361
           LN + Y+ +      F  I  +F C +++L IL     + DQI LL  R
Sbjct: 96  LNAFEYLIKEFKKDVFLKISDVFVCVYSNLNILYISRSFPDQISLLFSR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,551
Number of Sequences: 5004
Number of extensions: 39596
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)