Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5704
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical ...    30   0.89 
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   3.6  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   3.6  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC006830-1|AAK68610.3|  802|Caenorhabditis elegans Hypothetical
           protein ZK105.3 protein.
          Length = 802

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 252 LKYSYNGCPTLQTETHYCFTAEIGRVVVPTRADSQEVLPPVVEFDLSNKNAVLRSVN 422
           + +S      +   T +C+ A +G+  +       E++ PVVE    NK  V+ SV+
Sbjct: 1   MNWSIKALLFISCATTFCYVALMGKADLSANVKRTELISPVVEIKNGNKWIVVTSVS 57


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 293 NALLLHGRNRQSGGTYPCG 349
           +A L+ GRN++SGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 293 NALLLHGRNRQSGGTYPCG 349
           +A L+ GRN++SGGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 211 NVNAPPP*DISSKVSSIVTTAAPPFKP 291
           N NAPPP    S +  ++ T APP  P
Sbjct: 466 NANAPPPPGPPSSLLPLINTNAPPPPP 492


>Z68753-2|CAD56618.1|  480|Caenorhabditis elegans Hypothetical
           protein ZC518.1b protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 88  YMYIKLNEN--LTFILGFFIAYMGGRAHS-PTGVKWL 189
           Y   KL+ N  LTF+LGFF++++  R  S   G+ W+
Sbjct: 68  YFDNKLDANIPLTFLLGFFVSFVVARWGSILNGIGWI 104


>Z68753-1|CAA92989.1|  499|Caenorhabditis elegans Hypothetical
           protein ZC518.1a protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 88  YMYIKLNEN--LTFILGFFIAYMGGRAHS-PTGVKWL 189
           Y   KL+ N  LTF+LGFF++++  R  S   G+ W+
Sbjct: 68  YFDNKLDANIPLTFLLGFFVSFVVARWGSILNGIGWI 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,926,849
Number of Sequences: 27780
Number of extensions: 228194
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)