Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5704
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    27   0.12 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    27   0.12 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    27   0.12 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.9  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 120 IYPGFFYCLHGWPSSQPN 173
           IYPG  +C HG  SS PN
Sbjct: 30  IYPGTLWCGHGNKSSGPN 47


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 120 IYPGFFYCLHGWPSSQPN 173
           IYPG  +C HG  SS PN
Sbjct: 35  IYPGTLWCGHGNKSSGPN 52


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 120 IYPGFFYCLHGWPSSQPN 173
           IYPG  +C HG  SS PN
Sbjct: 35  IYPGTLWCGHGNKSSGPN 52


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 266 QRLPHPSNRNALL-LHGRNRQSGGTYPCGLTR 358
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 266 QRLPHPSNRNALL-LHGRNRQSGGTYPCGLTR 358
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 82  NAYMYIKLNENLTFILGFFIAYMG 153
           N Y Y  LN     ILGF I  +G
Sbjct: 40  NWYQYPPLNPMWHGILGFVIGMLG 63


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 240 YISRWGRIYVLDVYGLQ*PLNTSWAVSSATHVSNKKTQDKC*IFI 106
           Y+S+W  +Y+L    LQ     +    S+ ++S K    K  +F+
Sbjct: 228 YVSQWEEVYILQ--NLQKKRTRAEGRLSSDNMSKKSPVRKATLFL 270


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 82  NAYMYIKLNENLTFILGFFIAYMG 153
           N Y Y  LN     ILGF I  +G
Sbjct: 6   NWYQYPPLNPMWHGILGFVIGMLG 29


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 439 EQDLNLVKIIYIQRFRYV 492
           E+DL+L  I+Y   F Y+
Sbjct: 518 ERDLSLRMILYFSEFAYL 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,665
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)