Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5703
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    27   2.7  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   3.6  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    26   4.8  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    26   4.8  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   6.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.3  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   6.3  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   8.3  

>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 587 IMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAVS 480
           I ++   +    +G  +D+FGRKN ++  +I + VS
Sbjct: 123 IAYVGTIVGQLSFGWYSDRFGRKNGMITATIILIVS 158


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 89  FIKNSIRPEKNWQETQQACSFLTFSFFIIIDFFLNIH 199
           F K+  R   NW +++  C  L F  FI+I  +  ++
Sbjct: 119 FPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVN 155


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 228 NVTIITILKCPERATHSHL 284
           ++ I+ + +CP+RA  SHL
Sbjct: 425 SIPIVMVTRCPQRARQSHL 443


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 472 MTRILGARLLNCFFYCLDGWMSSQPNRC*ALEPVDIYDVNAPSTL 338
           M +  G R+   F + ++GW+ S  +RC    P+ + DV  P+ +
Sbjct: 501 MVQYFGERMEG-FVFTVNGWVQSYGSRC-VRPPIIVGDVYRPAPM 543


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 29  NKKLFNINTYLL--NVKKNYRQFIKNSIRPEKNWQETQQAC 145
           N + FN  + L   ++ K+YR F+ NS R E N   T  AC
Sbjct: 40  NPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTAC 80


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 442 NCFFY--CLDGWMSSQPNRC*ALEPVDIYDVNAPST 341
           N FF+  C+D W++S  N C       +   + PS+
Sbjct: 545 NHFFHRECIDQWLTSSQNSCPLCRTKGVASASTPSS 580


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 343 TLRYQF*AYYKVNDYLEDCTKWE 275
           T R  + +YY+VN Y   C  WE
Sbjct: 50  TERSDYFSYYRVNLYRSSCPLWE 72


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 588 HHVHIRTDRRLHLWHCC*QVRKEKCSSLLLYSDC 487
           H   I++   L LWH      KEKC +LL  + C
Sbjct: 47  HEELIQSINLLDLWHQLIPGTKEKCLTLLSRAPC 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,724
Number of Sequences: 5004
Number of extensions: 59871
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)