Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5703
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0694 + 26844075-26844217,26844417-26844489,26844577-268447... 31 0.93
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184... 31 0.93
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 30 2.2
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 29 2.8
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 29 2.8
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 29 2.8
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 29 5.0
08_02_0742 - 20630313-20630798 28 6.6
07_03_0457 - 18404577-18405193,18405317-18405563,18405734-184059... 28 6.6
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 28 6.6
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 28 6.6
>03_05_0694 +
26844075-26844217,26844417-26844489,26844577-26844781,
26845516-26845655,26846858-26846983,26847455-26847622,
26848486-26848650,26849433-26849594,26849682-26849761,
26849975-26850038
Length = 441
Score = 31.1 bits (67), Expect = 0.93
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -1
Query: 506 CCSIPIAVSIDDDSYSRCKTFKLLFLL---LRWVDEFTAQQVLSPRTRRHLRRKCA 348
C ++PI ++ SY R K +LLF L +R V +T + +L+ +H R KC+
Sbjct: 230 CGALPIQLAA---SYGRRKDVELLFPLTSPIRAVSNWTVEGILAHAKSKHARSKCS 282
>01_01_0216 +
1843413-1843509,1844583-1844694,1844841-1844908,
1845165-1845297,1845404-1845503,1845562-1845722,
1846095-1846188,1846273-1846426,1846597-1846743,
1846819-1846892,1846985-1847073,1847161-1847275,
1847569-1847751
Length = 508
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 599 WMASIMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAV 483
W+ S A F G ADKFGR + +IP+AV
Sbjct: 94 WVVSTTLAGATAGSFTGGALADKFGRTRTFILDAIPLAV 132
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 437 LFLLLRWVDEFTAQQVLSPRTRRH 366
+FL+ RW+DE A+++++ R+ RH
Sbjct: 59 VFLIDRWIDENVAREIINHRSLRH 82
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 59 LLNVKKNYRQFIKNSIRPEKNWQ 127
++N +KN + I NS+ PE++WQ
Sbjct: 1636 IINQRKNILEIILNSLSPEESWQ 1658
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 59 LLNVKKNYRQFIKNSIRPEKNWQ 127
++N +KN + I NS+ PE++WQ
Sbjct: 1632 IINQRKNILEIILNSLSPEESWQ 1654
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 310 LYSKLRTDISRWMAHLRRR--CLRVLGLNTCWAVNSSTHLS--NKKSSLKVLHREYES 471
L S L RW+A L+R+ CL +L + N ST +S K+S LK+ R E+
Sbjct: 694 LRSGLAFGARRWLATLQRQCECLAILMSSATVTANDSTAISQEGKRSMLKLARRMTEN 751
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/48 (20%), Positives = 27/48 (56%)
Frame = -1
Query: 650 MGEDTPSNAPVTETEVSWMASIMFIFAPIAVFIYGIAADKFGRKNALL 507
+G+ + ++ S + S++F+ + + +GI +D +GR+ A++
Sbjct: 71 VGQSVQAEWELSAQAESLITSVVFVGMLVGAYSWGIVSDNYGRRQAVM 118
>08_02_0742 - 20630313-20630798
Length = 161
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 660 SASHGRRHTIERPRHGDGSILDGVHHVHIRTDRR 559
S+SHG R R G G DGV V T +R
Sbjct: 63 SSSHGEEEAARRRRRGRGEEADGVDPVRAVTTKR 96
>07_03_0457 -
18404577-18405193,18405317-18405563,18405734-18405953,
18406239-18406333
Length = 392
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 345 DGAFTS*MSTGSRA*HLLGCELIHPSKQ*KKQFKSLAPRIRVIINTYSNRNRAAEKSIFP 524
DG S MST SR C++ S KK + +R ++N++++++ + I
Sbjct: 256 DGFENSPMSTNSRKRGSSSCDVSTASSLGKKSKSPVVKLMRGLLNSFTSKSDKSNTLI-- 313
Query: 525 SELVSSNAIDE 557
+ELV+S + E
Sbjct: 314 TELVNSKKLKE 324
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +1
Query: 388 NTCWAVNSSTHLSNKKSSLKVLHREYESSSILTAIGIEQQRRAFFLPNLSAAMP*MKTAI 567
N C +++S+LK++HR+ + S+IL ++ + F L L+ M T I
Sbjct: 709 NICLGTAKGLCYLHEESTLKIIHRDIKPSNILLDERLQPKISDFGLAKLNDDRGRMSTRI 768
Query: 568 GANMNMM 588
+ M
Sbjct: 769 AGTVGYM 775
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -1
Query: 593 ASIMFIFAPIAVFIYGIAADKFGRKNALLCCSIPIAV 483
AS MF A +V I+GI ADK+GRK ++ I I +
Sbjct: 143 ASYMFGRALSSV-IWGIVADKYGRKPIIIITLISIII 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,919,097
Number of Sequences: 37544
Number of extensions: 388724
Number of successful extensions: 1112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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