Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5703
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z47810-7|CAH10843.1|  538|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z47810-6|CAB76718.1|  504|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL031264-3|CAH04705.1|  538|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL031264-2|CAB76735.1|  504|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical ...    28   5.9  
U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone...    28   7.8  
AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear recep...    28   7.8  
AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormo...    28   7.8  

>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 602 SWMASIMFIFAPIAVFIYGIAADKFGRK 519
           +W+A+I FI A +   +YG   D FGRK
Sbjct: 97  AWIATIQFIGALVGALVYGHLGDHFGRK 124


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 608 EVSWMASIMFIFAPIAVFIYGIAADKFGRK 519
           + +W+A+I FI   I    YG   D FGRK
Sbjct: 95  DAAWVATIQFIGVLIGAITYGHLGDHFGRK 124


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 26  INKKLFNINTYLLNVKKNYRQFIKNSIRPEKNWQETQQACSFLTFS 163
           ++K +FN N YL   K N  Q  K+S R  K  +  +   + ++F+
Sbjct: 835 LSKLVFNGNDYLAKTKMNSAQLSKSSSRESKGQRNVKTRIASISFT 880


>Z47810-7|CAH10843.1|  538|Caenorhabditis elegans Hypothetical
           protein F45E10.2b protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 590 SIMFIFAPIAVFIYGIAADKFGRKNALLCCSI 495
           ++ FI   I  F  G+ ADK GRK  L  C +
Sbjct: 151 AVYFIGQMIGSFTCGVMADKIGRKKVLFWCLV 182


>Z47810-6|CAB76718.1|  504|Caenorhabditis elegans Hypothetical
           protein F45E10.2a protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 590 SIMFIFAPIAVFIYGIAADKFGRKNALLCCSI 495
           ++ FI   I  F  G+ ADK GRK  L  C +
Sbjct: 117 AVYFIGQMIGSFTCGVMADKIGRKKVLFWCLV 148


>AL031264-3|CAH04705.1|  538|Caenorhabditis elegans Hypothetical
           protein F45E10.2b protein.
          Length = 538

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 590 SIMFIFAPIAVFIYGIAADKFGRKNALLCCSI 495
           ++ FI   I  F  G+ ADK GRK  L  C +
Sbjct: 151 AVYFIGQMIGSFTCGVMADKIGRKKVLFWCLV 182


>AL031264-2|CAB76735.1|  504|Caenorhabditis elegans Hypothetical
           protein F45E10.2a protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 590 SIMFIFAPIAVFIYGIAADKFGRKNALLCCSI 495
           ++ FI   I  F  G+ ADK GRK  L  C +
Sbjct: 117 AVYFIGQMIGSFTCGVMADKIGRKKVLFWCLV 148


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -3

Query: 669 PSQSASHGRRHTIERPRHGDGSILDGVHHVHIRTDRRLHL----WHCC 538
           P   + H RRHT E+P   +          H+RT RR H     +HCC
Sbjct: 259 PDILSRHTRRHTGEKPFKCEDCGRFFSRSDHLRTHRRTHTDEKPYHCC 306


>AL032640-4|CAA21642.1|  369|Caenorhabditis elegans Hypothetical
           protein Y43F8A.4 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 44  NINTYLLNVK-KNYRQFIKNSIRPEKNWQETQQACSFLTFSFFIIIDFFLNIHYKYSLQG 220
           N+  Y + VK + ++QF++N ++  +NW      CS L   F      F NI + + L  
Sbjct: 2   NLEEYFIEVKPQEFQQFLRNLLQNSQNW---AVFCSNLQI-FMSFFGVFFNILHIFILLN 57

Query: 221 VL*RNNYHNIEMPGASNS 274
              R    N+ + G + S
Sbjct: 58  KSMRRQATNVLIIGIAIS 75


>U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone
           receptor-like proteinprotein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -3

Query: 711 ACQYSRM---VPPGLDLPSQSASHGR-RHTIERPRHGDGSILDGVHH-VHIR 571
           AC+Y R+   +  G+D  S      R  +T  + RH D  +  GVHH  HIR
Sbjct: 62  ACRYCRLQKCLAVGMDKNSIQNDRDRIGYTKRKRRHDDNDMEGGVHHSEHIR 113


>AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-47 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -3

Query: 711 ACQYSRM---VPPGLDLPSQSASHGR-RHTIERPRHGDGSILDGVHH-VHIR 571
           AC+Y R+   +  G+D  S      R  +T  + RH D  +  GVHH  HIR
Sbjct: 62  ACRYCRLQKCLAVGMDKNSIQNDRDRIGYTKRKRRHDDNDMEGGVHHSEHIR 113


>AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 47 protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -3

Query: 711 ACQYSRM---VPPGLDLPSQSASHGR-RHTIERPRHGDGSILDGVHH-VHIR 571
           AC+Y R+   +  G+D  S      R  +T  + RH D  +  GVHH  HIR
Sbjct: 62  ACRYCRLQKCLAVGMDKNSIQNDRDRIGYTKRKRRHDDNDMEGGVHHSEHIR 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,277
Number of Sequences: 27780
Number of extensions: 339380
Number of successful extensions: 1051
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)