Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5703
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.0  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 641 DTPSNAPVTETEVSWMAS-IMFIFAPIAVFI 552
           D P  A V   +V WMA  +MF+FA +  F+
Sbjct: 252 DIPPVAYVKALDV-WMAGCMMFVFAALGEFV 281


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 8   LIKSNQINKKLFNINTYLLNVKKNYRQFIKNSIR 109
           +I S   N K  N N Y  N   NY     N+ +
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYK 114


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 8   LIKSNQINKKLFNINTYLLNVKKNYRQFIKNSIR 109
           +I S   N K  N N Y  N   NY     N+ +
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYK 114


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 450 LAPRIRVIINTYSNRNRAAEKSIFPS--ELVSSNAIDEDGDRCEYEH 584
           + P IR  I     R +  +  + P    L +SN+I  + D  +Y H
Sbjct: 191 IGPSIR--ITPAKKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDYSH 235


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 654 SHGRRHTIERPRHGDGSILDGVHHVHIRTDRRLH 553
           +H R HT E+P H        V   ++R   R+H
Sbjct: 27  THMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVH 60


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 687 PPGLDLPSQSASHGRRHTIERPRHGDGSILD 595
           PP    P      GRR     PR+   S +D
Sbjct: 394 PPPRQTPPSRKESGRRRRRRTPRYNSVSKID 424


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 11  IKSNQINKKLFNINTYLLNVKKNYRQFIKN 100
           I S+  NK + N N Y  N   NY++   N
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYKKLYYN 110


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 74  KNYRQFIKNSIRPEKNWQETQQACSFLTFSFF 169
           + +R++++N  + +   +ETQQA   +    F
Sbjct: 7   QEFRRYLRNRNQLQHVLEETQQALELINLENF 38


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 20  NQINKKLFNINTYLLNVKKNYRQFIKN 100
           N  N    N N Y  N   NY++   N
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYN 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,324
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)