Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5701
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    42   7e-05
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    39   0.001
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.9  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   9.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.1  

>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2   VDETLMCSFQILKPADKRKL--YSGLNMGRPNTPPRAQPKNK 121
           VDE+L+CSFQILKPA+K++   Y G +     TPPR   KNK
Sbjct: 284 VDESLLCSFQILKPAEKKQRYGYQGSSQNWHMTPPR---KNK 322


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +2

Query: 2   VDETLMCSFQILKPADKRKLYSGLNMGRPNTPPRAQPKNKKN 127
           V+E L+CSFQILKPA+KR+  S  ++    +   +  K+K N
Sbjct: 281 VNEDLLCSFQILKPAEKRQRVSQSSIKESKSATNSLKKSKNN 322


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 58  AVLGPQHGPPQHAAARTAQEQEELMAPHARRPP 156
           +V+G +   P  +     Q+ EE++ PHA+R P
Sbjct: 219 SVIGKKFALPAGSEREDYQKYEEIIVPHAQRAP 251


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 302 NCPSLWEVAGLPDSNAHAFN 243
           N P+ W+V GLP +N    N
Sbjct: 233 NAPTFWDVTGLPINNTEDLN 252


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 695 ISIIYNSWYAQITKGSFWFWYLNWG 769
           I I Y+ W + +  G   F YL+WG
Sbjct: 12  IVIGYHLWMSPVLAGPLNFGYLSWG 36


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 761  LNTKTKRTPW*FVRTNYYILLKSEHVFDFFESVKKKN*--NLIEESIFTAN-FRET*YWN 591
            LNT+T       ++ N  I L S   F F + ++  N    L+E  +F         Y+N
Sbjct: 3324 LNTQTNEELEDSIKVNSIIKLPSCSQFPFHQYIELINPCLPLVEGLLFELERSNNENYYN 3383

Query: 590  VFFFLFQ 570
             FFFLF+
Sbjct: 3384 SFFFLFE 3390


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 2   VDETLMCSFQILKPADK 52
           V+  L+CSF+++KP D+
Sbjct: 469 VNSELLCSFELIKPLDQ 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,789
Number of Sequences: 5004
Number of extensions: 66269
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)