Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5701
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143           46   3e-05
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283...    36   0.047
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075...    33   0.25 
03_05_0543 - 25404630-25405408,25405461-25405605                       28   9.5  

>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
          Length = 339

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +2

Query: 2   VDETLMCSFQILKPADKRKLYSGLNMGRPNTPPR 103
           +D++L CSFQILKP+DK+      NM +P TPPR
Sbjct: 299 IDDSLTCSFQILKPSDKKGKAGTGNMSKPGTPPR 332


>02_05_1246 -
           35226759-35226860,35227521-35227715,35227804-35228363,
           35229299-35229476
          Length = 344

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +2

Query: 2   VDETLMCSFQILKPADKRKLYSG 70
           VD+TLMCSFQILKPA  RK+  G
Sbjct: 282 VDDTLMCSFQILKPA--RKMLGG 302


>01_03_0220 -
           13905808-13905831,13906694-13906885,13906960-13907519,
           13910007-13910187
          Length = 318

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 2   VDETLMCSFQILKPAD 49
           +DE+LMCSFQILKP D
Sbjct: 283 IDESLMCSFQILKPND 298


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 82  PPQHAAARTAQEQEELMAPHAR 147
           PP  AAA  A+E+EE MA  AR
Sbjct: 214 PPPAAAAAAAEEEEERMAREAR 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,640,608
Number of Sequences: 37544
Number of extensions: 452187
Number of successful extensions: 1301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)