Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5700
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 643 EVEIRVPLRQILRPRDLTVVINKNTS 720
           +++++VP R I+ P D++V  NK+ +
Sbjct: 703 KLQVKVPPRWIVEPTDVSVERNKHVA 728


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 150 PSYGTTARRRRKRSAEHNS 206
           PS   + RRRR+R+  +NS
Sbjct: 401 PSRKESGRRRRRRTPRYNS 419


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 640 EEVEIRVPLRQILRPRDLTVVINKNTS 720
           + + + VP R I+ P D++V  NK+ +
Sbjct: 698 QRLVVHVPPRWIVEPTDVSVERNKHVA 724


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 275 KILSTPMLKKHVMKLIGL 328
           KIL+ P++K+H  K + L
Sbjct: 685 KILAEPLVKEHFKKALEL 702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,086
Number of Sequences: 438
Number of extensions: 3113
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)