Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5698
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    30   0.30 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    29   0.53 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    29   0.92 
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.1  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   2.1  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    26   4.9  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   6.5  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   6.5  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   6.5  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   8.6  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.6  

>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 582 ESWLSSVIGYGGIPWVFLLPVFTEFIGRKIPFIILGGEFISGRMLVFTAV 731
           ++ L+  +  G +    L   FTE IG+K       G +I G++L+ TAV
Sbjct: 58  QALLTGTVNAGCLFGAMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTAV 107


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 500 SQGKINRPYSTTNEELLDKRHPRTLFNASI--ILTCTNFFVIRVHD 369
           S GK+    S  ++ELLD R P T+  AS+  +  C N  V+ VH+
Sbjct: 243 SVGKVRVISSDFSKELLDLRLPETVAEASLKQMAWCGNDAVVLVHE 288


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 582 ESWLSSVIGYGGIPWVFLLPVFTEFIGRKIPFIILGGEFISGRMLVFTAV 731
           ++ L+  I  G +    L   FTE IG+K       G +I   +L+ TAV
Sbjct: 58  QALLTGTINAGCLFGAMLSSPFTERIGKKYSICFFSGVYIIAELLLVTAV 107


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 585 SWLSSVIGYGGIPWVF 632
           ++L+SVIGYG + W+F
Sbjct: 493 NFLTSVIGYGNVMWIF 508


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 44  VKFKGSSTGPHGANVRLIIKHNVNKCILITGITSTCQGISRIAIEDI 184
           V F+GS  G H  N R +   ++NK I + GI + C  +    I+ +
Sbjct: 104 VGFRGSF-GDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSV 149


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 585 SWLSSVIGYGGIPWVF 632
           ++L+S+IGYG + W+F
Sbjct: 505 NFLTSIIGYGNVMWIF 520


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 585 SWLSSVIGYGGIPWVF 632
           ++L+ VIGYG + W+F
Sbjct: 504 NFLTGVIGYGNVMWIF 519


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 351 YYSFLQIMDSNYKEVSTRENYGSIKKCSWMPFI 449
           Y +F+Q  D NY +     NY  IK   W P I
Sbjct: 321 YITFVQ--DRNYNDSRYSLNYEKIKSLGWRPQI 351


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 184 KNKNSCCFLLNVHSFVESVFA 246
           K+ NSC +L +V SFVE  F+
Sbjct: 112 KDNNSCVWLNSVKSFVEKQFS 132


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 262 LPCMVVQTHFRQTNEHLTKNSTSFYSY 182
           +P M+V     Q+  HL  N  +FYS+
Sbjct: 119 MPSMIVSAFSHQSGWHLLFNMVAFYSF 145


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -2

Query: 192 FILISSIAIREIP*HVLVIPVISMHLFTLCLMINRTLAPCGPVELPLNFTD 40
           F +   I+IR IP  +    +I+   FTL    NR   PC    L LNF D
Sbjct: 99  FKVRKEISIRSIPPELPPFELIATDPFTLEAYTNRIGKPC----LTLNFQD 145


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +1

Query: 505 PQEHPRYSYLSSEKRQTLQKQSRRKWSHGYHPS*DMAGYLGYSYYQFSLNS 657
           P E+ RY+  +++  + +++Q RR+    Y  + D +G  GY+ ++ + N+
Sbjct: 43  PTENRRYARPTAQMNRVIEQQPRRR---DYFQNNDNSGRRGYNRHENNGNA 90


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 245 ANTLSTNE*TFNKKQHEF 192
           A  L+T+E TFNKK HE+
Sbjct: 462 AQYLATDERTFNKKLHEW 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,822
Number of Sequences: 5004
Number of extensions: 63249
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)