Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5698
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 31 0.97
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 31 0.97
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 30 1.7
03_05_0352 + 23395976-23396040,23396220-23396286,23396753-233971... 29 3.9
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 3.9
01_07_0048 - 40741101-40741109,40741110-40741185,40741691-407417... 29 5.2
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 28 9.0
01_06_0249 + 27868897-27871599 28 9.0
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 610 MAGYLGYSYYQFSLNSSGARYRLLFWGVNSLVGVCWFLL 726
M G+ +SYY + S AR+ + W +N V C +L
Sbjct: 209 MTGFGNFSYYYIKKDFSIARFAQMMWRLNFFVAFCCIVL 247
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 610 MAGYLGYSYYQFSLNSSGARYRLLFWGVNSLVGVCWFLL 726
M G+ +SYY + S AR+ + W +N V C +L
Sbjct: 208 MTGFGNFSYYYIKKDFSLARFAQMMWRLNFFVAFCCIVL 246
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 610 MAGYLGYSYYQFSLNSSGARYRLLFWGVNSLVGVCWFLL 726
M G+ +SYY + S AR+ + W +N V C +L
Sbjct: 199 MTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAFCCIVL 237
>03_05_0352 +
23395976-23396040,23396220-23396286,23396753-23397122,
23397229-23397401,23397751-23397996
Length = 306
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 205 NSTSFYSYIFNCNS*NPLTCTRNSSDQYALIYIMLND 95
+ T Y Y+ N +S + + CT S +YA +Y+ D
Sbjct: 204 SETPIYGYVMNNSSIHGIPCTVEISKKYADVYLPFED 240
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 504 ATGAPTVFIPQLRKEANSTEAVSEEMESWLSSVIGY 611
A G P FI + +EA +E VS + W+ + GY
Sbjct: 2572 AKGCPEEFI-HINREALESEYVSSNLHHWIDLIFGY 2606
>01_07_0048 -
40741101-40741109,40741110-40741185,40741691-40741741,
40742316-40742584
Length = 134
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 486 YFTLGMATGAPTVFIPQLRKEANSTEAVSEEMESWLSSVIGYGGIPWVFLLPVFTEF 656
+ LG+A APT P +S+ + E++ + + Y G P +F LP+ +
Sbjct: 29 WLQLGLAAAAPTATAPAAAAAPSSSTPTAPELDVFAAK--QYNGRPPLFPLPILRSY 83
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 649 VKTGNKNTQGIPPYPMTDDSHDSISSETASVE 554
+K G T+ PY DD S+S+ AS++
Sbjct: 197 IKNGGLTTESNYPYAAVDDKFKSVSNSVASIK 228
>01_06_0249 + 27868897-27871599
Length = 900
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 480 TIYFTLGMATGAPTVFIPQLRKEANSTEAVSEEMESWLSSVIGYGG-IPWVFLLP--VFT 650
++YF G+ G + R+E+ +S+E + ++ Y G I FLLP +F
Sbjct: 740 SLYFLGGILAGIIHIINVHTRRESPVVVRISQEPATIWEDLVSYAGLILDGFLLPQIIFN 799
Query: 651 EFIGRKI----PFIILGGEFI 701
G ++ P+ +GG I
Sbjct: 800 RLSGSRVQAISPWFYIGGTLI 820
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,128,909
Number of Sequences: 37544
Number of extensions: 379361
Number of successful extensions: 990
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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