Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5697
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444... 36 0.032
05_01_0214 - 1615519-1616775 33 0.22
08_02_0707 - 20212190-20214592 31 0.90
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 2.8
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 29 2.8
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 29 4.8
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 29 4.8
09_01_0003 - 95371-95433,95485-95715,95809-95862,96730-96972,985... 28 6.4
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 28 6.4
11_01_0404 + 3071412-3071464,3073572-3074970 28 8.4
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 28 8.4
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 8.4
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 8.4
>07_03_1083 -
23840789-23841634,23841991-23842017,23844401-23844442,
23844882-23845002,23845824-23846062
Length = 424
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 3 RVRYNSNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHH 167
RV YN N TK+ +H+F+ L+ P +A VE + H S++ GHHH
Sbjct: 156 RVCYNVN-CTKLSHHLFMHLVQN-PRLPLRFVVQAMLVEQLHSHHSMLLSGGHHH 208
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.1 bits (72), Expect = 0.22
Identities = 28/93 (30%), Positives = 37/93 (39%)
Frame = +3
Query: 60 LIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVY 239
L+ AV+AF G+ + V +DH GH H H H H +H H +
Sbjct: 161 LMFAVSAF-GLFVNIIMAVLLGHDHGH---GHGHGHGHGHSHDHDHGGSDHDHHH----H 212
Query: 240 VKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKH 338
+EH H+ H G S HP T H H
Sbjct: 213 EDQEHGHVHHHEDGHGNSITVNLHHHPGTGHHH 245
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.1 bits (67), Expect = 0.90
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Frame = +3
Query: 96 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHP 275
H+ + K +H G HHH H+H++ HQ +H H + + + +L+ P
Sbjct: 565 HNSLTENSCKENHSHCHGHDHHHHH-HHDHSEHHQQ-SGDHAHQDISNISSDPA-ILEIP 621
Query: 276 LEKGKSEQNLKLIHPETEHKHGGGLVLED------DRHNIEHHI 389
L N H H GGL + +RH+I+H++
Sbjct: 622 L-------NSIHTHCSEAHSCNGGLQSSENHNKSRNRHHIDHNM 658
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 123 KYDHQSLIGESGHHHQIEHEHAKSHQS 203
K+ H LI E G+ Q+E++H K+ QS
Sbjct: 159 KHHHIQLIKEKGNFSQLENDHEKASQS 185
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 370 CLSSSRTSPPPCLCSVSG*ISLRFCSDFPFSRGCLRRWLC 251
C PP L V DF FSRG LR W C
Sbjct: 92 CTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRC 131
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -3
Query: 226 GWKCSNLIDW*DLACSCSI**WCPDSPIKDWWSYFASTWGASSCIIPGKAVTAAMSPRKI 47
G CS LI + CS S +C D P+++ + +W S+ P VT ++ +KI
Sbjct: 310 GIACSFLIKCKNSTCSRSFHTFCLDPPLQEIIGTWECSWCKSNA-APAVKVTEVLTSKKI 368
Query: 46 WYFILVARLL 17
+ R+L
Sbjct: 369 QRLVGHRRIL 378
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 258 HLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIASAGLE 407
+LL++ + + + +NL LI + GG+VLE D I ++ GLE
Sbjct: 245 YLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEKVSGHGLE 294
>09_01_0003 -
95371-95433,95485-95715,95809-95862,96730-96972,
98544-99317
Length = 454
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 568 NFSNQRTTVITTLNTDRLYLATAVRATNTKAINLIKASLNKQLSEYVL 711
++ N ++ + TD TA+ T +A++L ++L K+LSE V+
Sbjct: 209 SYPNLTQALLLLVGTDLEKALTAIDETKAQALDLKVSNLKKELSEAVM 256
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 111 QVEAKYDHQSLIGESGHHHQIEHEHAKSHQ 200
++E + + Q +G H H EHEH ++HQ
Sbjct: 290 EIELEEEEQRQLGHHHHQHHHEHEH-ENHQ 318
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 147 GESGHHHQIEHEHAKSHQSIKFEH 218
G+ HHH H+K+H S + EH
Sbjct: 118 GKIAHHHHHHRHHSKNHGSDEEEH 141
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = +3
Query: 216 HFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAS 395
H P++ HS + P K + ++ P E GGG H+ HH +S
Sbjct: 370 HASSSPMHRAHHHSPVTPSP-SKARPPIQVRSASPRVERGGGGGGSYTPSLHSHRHHASS 428
Query: 396 AG 401
G
Sbjct: 429 GG 430
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = +3
Query: 96 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHP 275
H + +DH+ GH H H H + H HP V+ H +H
Sbjct: 530 HQKGRHHRHHHDHRH---RHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHS 586
Query: 276 LEKGKS 293
E G++
Sbjct: 587 HEAGRN 592
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 159 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQ 299
HHHQ ++EH I F+H Y + +H + H + + +Q
Sbjct: 157 HHHQQQYEH---QNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQ 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,356,560
Number of Sequences: 37544
Number of extensions: 363464
Number of successful extensions: 1200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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