Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5693
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.61
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 1.4
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.5
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 3.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 5.7
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 7.6
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 7.6
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 7.6
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 10.0
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 93 RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP--TKPTRVSRNRSSKA 266
R+K + S + K + P K ++KRK E+S LH P + + +N++ K
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKK 184
Query: 267 K 269
K
Sbjct: 185 K 185
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 105 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISI 278
S+ L S A K Q+ P K R+R S + GL+P PT S+ RS + S+
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT-PSKKRSKRVLWSL 394
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 421 PSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCP 555
P ++ QL S + S T Q P+ RPEP+ S CP
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQSYCRPEPLSSNHVRSCP 161
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 382 TVSKLCPTIRESIPSAEPQLPRSGSKSVS 468
TVS P+ E PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 364 WVSNPRTVSKLCPTIRESIPSAEPQLPRSGSKSVSRATEQ 483
+V+NP S+ CPT + + A + GS+ + T Q
Sbjct: 197 FVTNPHADSQECPTPQSLLMRASHHMSERGSQQAHQTTPQ 236
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 129 KATKTSQRKPIKLNRKRKCKEISSTQHGL---HPPTKPTRVSRNRSSKAKISI 278
+ TKT R+ K+ R+RK + +++ P KP SR K ++
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYAL 584
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 536 SLHTGSGLATGPDFGSGNCSVALETDFE 453
S+H+ G D G+GN + LETD E
Sbjct: 15 SVHSREVSVNGSDSGTGNDAYKLETDDE 42
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 445 RSGSKSVSRATEQFPEPKSGPV 510
RS S+S+S TEQ PK PV
Sbjct: 186 RSSSRSISPVTEQPQSPKIQPV 207
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 156 PIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIML 290
P +LNR R KE + LH +R + +SS SI++ L
Sbjct: 113 PKRLNRSRSSKEDMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHL 157
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +3
Query: 132 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVS 245
++ +RKP + + K +S+ + + PT PT+++
Sbjct: 80 SSSEDERKPARHPQSSSQKPFASSTYNVELPTSPTKIT 117
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 575 SEIDPALGHS*VGSLHTGSGLATGPDFGSGNCSVALETDFEPDRGSCGSA 426
SE+DP+ S GS + S +AT GS SVA + + S +A
Sbjct: 960 SEVDPSTAASATGS--STSSIATASVSGSSTSSVATASATDSSTSSIAAA 1007
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,380
Number of Sequences: 5004
Number of extensions: 45204
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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