Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5693
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089514-1|AAL90252.1|  709|Drosophila melanogaster GH23026p pro...    31   1.4  
AE014297-807|AAS65127.1|  709|Drosophila melanogaster CG9801-PC,...    31   1.4  
AE014297-806|AAF54283.1|  709|Drosophila melanogaster CG9801-PB,...    31   1.4  
AE014297-805|AAF54282.1|  709|Drosophila melanogaster CG9801-PA,...    31   1.4  
BT001541-1|AAN71296.1|  659|Drosophila melanogaster RE09914p pro...    30   2.5  
AY113434-1|AAM29439.1|  659|Drosophila melanogaster RE25878p pro...    30   2.5  
AF231704-1|AAF36978.1|  659|Drosophila melanogaster poly A polym...    30   2.5  
AE013599-2939|ABI31107.1|  659|Drosophila melanogaster CG9854-PC...    30   2.5  
AE013599-2938|AAM68424.1|  659|Drosophila melanogaster CG9854-PB...    30   2.5  
AE013599-2937|AAF57528.2|  659|Drosophila melanogaster CG9854-PA...    30   2.5  
AB018431-1|BAB03279.1|  659|Drosophila melanogaster poly A polym...    30   2.5  
AB018430-1|BAB03278.1|  459|Drosophila melanogaster poly A polym...    30   2.5  
BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p pro...    29   4.4  
AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p pro...    29   4.4  
AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,...    29   4.4  
AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,...    29   4.4  
AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,...    29   4.4  

>AY089514-1|AAL90252.1|  709|Drosophila melanogaster GH23026p
           protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 KPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKA 266
           KP  L  KR+ K  S+    LHP T PTR +R   +++
Sbjct: 483 KPANLAPKRQNKSASAIYARLHPSTPPTRPARQSKAES 520


>AE014297-807|AAS65127.1|  709|Drosophila melanogaster CG9801-PC,
           isoform C protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 KPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKA 266
           KP  L  KR+ K  S+    LHP T PTR +R   +++
Sbjct: 483 KPANLAPKRQNKSASAIYARLHPSTPPTRPARQSKAES 520


>AE014297-806|AAF54283.1|  709|Drosophila melanogaster CG9801-PB,
           isoform B protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 KPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKA 266
           KP  L  KR+ K  S+    LHP T PTR +R   +++
Sbjct: 483 KPANLAPKRQNKSASAIYARLHPSTPPTRPARQSKAES 520


>AE014297-805|AAF54282.1|  709|Drosophila melanogaster CG9801-PA,
           isoform A protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 KPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKA 266
           KP  L  KR+ K  S+    LHP T PTR +R   +++
Sbjct: 483 KPANLAPKRQNKSASAIYARLHPSTPPTRPARQSKAES 520


>BT001541-1|AAN71296.1|  659|Drosophila melanogaster RE09914p
           protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AY113434-1|AAM29439.1|  659|Drosophila melanogaster RE25878p
           protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AF231704-1|AAF36978.1|  659|Drosophila melanogaster poly A
           polymerase protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AE013599-2939|ABI31107.1|  659|Drosophila melanogaster CG9854-PC,
           isoform C protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AE013599-2938|AAM68424.1|  659|Drosophila melanogaster CG9854-PB,
           isoform B protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AE013599-2937|AAF57528.2|  659|Drosophila melanogaster CG9854-PA,
           isoform A protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AB018431-1|BAB03279.1|  659|Drosophila melanogaster poly A
           polymerase protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 551 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 585


>AB018430-1|BAB03278.1|  459|Drosophila melanogaster poly A
           polymerase protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 168 NRKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKI 272
           NRKR   E++ +Q  L P  +P+  +R R S AKI
Sbjct: 351 NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKI 385


>BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p
           protein.
          Length = 1044

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 93  RKK*SVGSLTWSKATKTSQRKPIKLN-RKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 263
           RK   +  L WS+    +  + +    R R   E+S+T +G H   +P    R R+SK
Sbjct: 187 RKNEILSQLEWSQTRSEAHPQQVGYQGRHRHDSEVSATNNGSHVQQQPKLGRRQRNSK 244


>AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p
           protein.
          Length = 1032

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 93  RKK*SVGSLTWSKATKTSQRKPIKLN-RKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 263
           RK   +  L WS+    +  + +    R R   E+S+T +G H   +P    R R+SK
Sbjct: 175 RKNEILSQLEWSQTRSEAHPQQVGYQGRHRHDSEVSATNNGSHVQQQPKLGRRQRNSK 232


>AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,
           isoform B protein.
          Length = 1032

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 93  RKK*SVGSLTWSKATKTSQRKPIKLN-RKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 263
           RK   +  L WS+    +  + +    R R   E+S+T +G H   +P    R R+SK
Sbjct: 175 RKNEILSQLEWSQTRSEAHPQQVGYQGRHRHDSEVSATNNGSHVQQQPKLGRRQRNSK 232


>AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,
           isoform A protein.
          Length = 1032

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 93  RKK*SVGSLTWSKATKTSQRKPIKLN-RKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 263
           RK   +  L WS+    +  + +    R R   E+S+T +G H   +P    R R+SK
Sbjct: 175 RKNEILSQLEWSQTRSEAHPQQVGYQGRHRHDSEVSATNNGSHVQQQPKLGRRQRNSK 232


>AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,
           isoform C protein.
          Length = 1044

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 93  RKK*SVGSLTWSKATKTSQRKPIKLN-RKRKCKEISSTQHGLHPPTKPTRVSRNRSSK 263
           RK   +  L WS+    +  + +    R R   E+S+T +G H   +P    R R+SK
Sbjct: 187 RKNEILSQLEWSQTRSEAHPQQVGYQGRHRHDSEVSATNNGSHVQQQPKLGRRQRNSK 244


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,165,810
Number of Sequences: 53049
Number of extensions: 556131
Number of successful extensions: 2336
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2329
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)