Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5693
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    33   0.14 
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    31   0.99 
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        29   2.3  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    29   2.3  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    29   2.3  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 135  TKTSQRKPIKLNR--KRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKIS 275
            T  ++RK I + R   R  K+   +   LHPPT P+++S++ SS + ++
Sbjct: 1050 TPRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISKSASSSSDLT 1098


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 406 IRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPRA 561
           +RE  P AE   P S SK V    ++  +P   P+A+PE   S     C RA
Sbjct: 555 VREISPVAENLEPTSESKRVKSKKQKKQKPSENPIAKPEEKQSNACPKCFRA 606


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 127 DHVNDPTDYFFRNVENLSWFQQRCRCVD*YD*KYDKRGLP 8
           DH   P    + +V +L W+ Q  RC D +   +DK G+P
Sbjct: 139 DHWTTPEKQAYNDVGDLWWWLQNERCRDQFAISHDKLGVP 178


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 584 GLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 483
           G ++ + P  G+   G    GSG A G  FGSGN
Sbjct: 59  GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 584 GLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 483
           G ++ + P  G+   G    GSG A G  FGSGN
Sbjct: 59  GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
           helicase protein 2 protein.
          Length = 974

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 584 GLDSEIDPALGHS*VGSLHTGSGLATGPDFGSGN 483
           G ++ + P  G+   G    GSG A G  FGSGN
Sbjct: 59  GGNNNVGPRFGNGNAGGTGFGSGNAGGTGFGSGN 92


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 412 ESIPSAEPQLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT 543
           +S+   +P+ P+  SK+ ++   + P+PK  P   P+P  +EP+
Sbjct: 14  DSLGGPKPKDPKLASKAPAKKPSETPKPKEVPKELPKP--AEPS 55


>Z68159-3|CAD89733.1|  351|Caenorhabditis elegans Hypothetical
           protein C33D9.3b protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 391 KLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSG-PVARPEPVWSEPT*LCP 555
           KLC +   ++ + +  +P+S   S  ++T  F  P    P+  PEP +   + + P
Sbjct: 267 KLCKSRFVNVSTTDTPIPKSSKSSPGKSTPTFALPSPPVPLKSPEPQYCHQSIVAP 322


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 391 KLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSG-PVARPEPVWSEPT*LCP 555
           KLC +   ++ + +  +P+S   S  ++T  F  P    P+  PEP +   + + P
Sbjct: 270 KLCKSRFVNVSTTDTPIPKSSKSSPGKSTPTFALPSPPVPLKSPEPQYCHQSIVAP 325


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 388 SKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 507
           S   P+     PS++   P +GS + S+ + Q P P   P
Sbjct: 380 SSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP 419


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 388 SKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 507
           S   P+     PS++   P +GS + S+ + Q P P   P
Sbjct: 587 SSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP 626


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 388 SKLCPTIRESIPSAEPQLPRSGSKSVSRATEQFPEPKSGP 507
           S   P+     PS++   P +GS + S+ + Q P P   P
Sbjct: 587 SSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNP 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,065
Number of Sequences: 27780
Number of extensions: 273151
Number of successful extensions: 1062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)