Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5692
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical ...    29   3.0  
L11247-5|AAA28006.1|  100|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   6.9  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   6.9  
Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 66  FNRTYLILYFQFQKRNTIDNSRAHAEVDRFELD 164
           FN+T+L  + Q QK    D +  +AEV RFE++
Sbjct: 758 FNKTHLATWLQAQKLAKPDAAFVNAEVARFEME 790


>AF016672-4|AAD47126.1|  968|Caenorhabditis elegans Hypothetical
           protein F56D12.6a protein.
          Length = 968

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 66  FNRTYLILYFQFQKRNTIDNSRAHAEVDRFELD 164
           FN+T+L  + Q QK    D +  +AEV RFE++
Sbjct: 775 FNKTHLATWLQAQKLAKPDAAFVNAEVARFEME 807


>AC092690-1|AAK73856.2|  427|Caenorhabditis elegans Hypothetical
           protein BE0003N10.2 protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +1

Query: 343 CWLLKLLYCRLADPADFVVPQSINKRPKLLYKINLKQKESVRRGTHQRENKIVCFLY 513
           C LLKL Y RL      ++P S++K+  + Y+      E+ +R TH+RE +I C+ +
Sbjct: 369 CGLLKL-YFRLLPQQ--LIPFSVHKQLLVAYQ------ETNQRSTHERERQIRCWKF 416


>L11247-5|AAA28006.1|  100|Caenorhabditis elegans Hypothetical
           protein F09G8.7 protein.
          Length = 100

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 505 NKQFCFPFDVSPVEQIPFVLSLFYTKV*VFYLSIEALRSLPGQLVYNKEASTTNTHGSEV 326
           NK+    + +  ++QIP VL+    K      S       P Q+ YN     T T G+E+
Sbjct: 5   NKKSKPKYTLENLQQIPGVLAFMICKGNTIAHSTFLEAENPRQIAYNAMRMATRTQGTEL 64

Query: 325 R 323
           R
Sbjct: 65  R 65


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 290  PTCPSASVSRTARSHRDISPSPSVALCESETSEPSARPLEPGIKFESIDFSVSS 129
            PT P+A  S  + S+   SPS S        + PS  P  P     S  +S +S
Sbjct: 1598 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1651


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 290  PTCPSASVSRTARSHRDISPSPSVALCESETSEPSARPLEPGIKFESIDFSVSS 129
            PT P+A  S  + S+   SPS S        + PS  P  P     S  +S +S
Sbjct: 1605 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1658


>Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical
           protein T22B3.2a protein.
          Length = 1032

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 25/79 (31%), Positives = 33/79 (41%)
 Frame = -3

Query: 413 FID*GTTKSAGSASLQ*RSFNNQHSRL*GSNTRNSGSKLRLPTCPSASVSRTARSHRDIS 234
           F+D  T  S+GS SL     +   S    ++  +S   L  P     SVS  + S RD+S
Sbjct: 9   FVDNNTLTSSGSGSLSPPITSRPASGQ--ASPLSSNGSLSPPVDDQGSVSYNSDSPRDLS 66

Query: 233 PSPSVALCESETSEPSARP 177
           P     L      E  ARP
Sbjct: 67  PLLLSELACLNMREVVARP 85


>Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical
           protein T22B3.2a protein.
          Length = 1032

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 25/79 (31%), Positives = 33/79 (41%)
 Frame = -3

Query: 413 FID*GTTKSAGSASLQ*RSFNNQHSRL*GSNTRNSGSKLRLPTCPSASVSRTARSHRDIS 234
           F+D  T  S+GS SL     +   S    ++  +S   L  P     SVS  + S RD+S
Sbjct: 9   FVDNNTLTSSGSGSLSPPITSRPASGQ--ASPLSSNGSLSPPVDDQGSVSYNSDSPRDLS 66

Query: 233 PSPSVALCESETSEPSARP 177
           P     L      E  ARP
Sbjct: 67  PLLLSELACLNMREVVARP 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,214,786
Number of Sequences: 27780
Number of extensions: 214642
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)