Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5689
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 155 3e-38
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 119 2e-27
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 49 2e-06
07_01_0479 + 3606663-3607448 37 0.014
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 34 0.100
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 29 2.8
08_01_0975 + 9819387-9821512,9821768-9821910,9822185-9822349,982... 28 6.5
10_08_0983 + 22036489-22036505,22036814-22036928,22037040-220371... 27 8.7
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 155 bits (375), Expect = 3e-38
Identities = 74/90 (82%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = +1
Query: 127 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 303
FSTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVP+T
Sbjct: 16 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 75
Query: 304 XXXXXAVNKDKFISKMFLRGDSVILVLRNP 393
VNKD+FISKMFLRGDSVI+VLRNP
Sbjct: 76 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 105
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 119 bits (286), Expect = 2e-27
Identities = 56/79 (70%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Frame = +1
Query: 160 SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XXXXXXXAVNKDK 336
S + +VLINC+NNKKLLGRV+AFD HCNMVLENV+EMWTEVP+T VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436
Query: 337 FISKMFLRGDSVILVLRNP 393
FISKMFLRGDSVI+VL+NP
Sbjct: 437 FISKMFLRGDSVIIVLKNP 455
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/89 (32%), Positives = 51/89 (57%)
Frame = +1
Query: 139 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXX 318
PL ++ S+ + ++ + R++++L G++ A+D+H NM+L +V+E+ T V
Sbjct: 19 PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEI 76
Query: 319 AVNKDKFISKMFLRGDSVILVLRNPLATA 405
+ I +F+RGD VILV PL TA
Sbjct: 77 VRTTKRTIPFLFVRGDGVILV-SPPLRTA 104
>07_01_0479 + 3606663-3607448
Length = 261
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/68 (25%), Positives = 39/68 (57%)
Frame = +1
Query: 172 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKM 351
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + + + + +
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSKTTGEREERRTLGLL 72
Query: 352 FLRGDSVI 375
LRG+ V+
Sbjct: 73 LLRGEEVV 80
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 33.9 bits (74), Expect = 0.100
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 130 STGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXX 309
ST ++TQ +K Q+ + + + ++ GR+ FD + N+VL++ +E+
Sbjct: 3 STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI----------- 51
Query: 310 XXXAVNKD--KFISKMFLRGDSVILVLRNPLATAA 408
V KD K + ++ L+GD++ L++ + A
Sbjct: 52 ---NVKKDTRKSLGRILLKGDNITLMMNTSIRDMA 83
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +1
Query: 175 TQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 273
+++ + + +K+L+G + FD + NMVLE+V E
Sbjct: 90 SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122
>08_01_0975 +
9819387-9821512,9821768-9821910,9822185-9822349,
9822382-9822419
Length = 823
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 281 VHISLTFSNTMLQCRSKAFTLPKS 210
+H L F TMLQC F PKS
Sbjct: 563 LHTFLVFDTTMLQCSWSCFVPPKS 586
>10_08_0983 +
22036489-22036505,22036814-22036928,22037040-22037194,
22037416-22037677,22037826-22038014
Length = 245
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 374 ITESPRRNILEMNLSLFTALPFFPLPVLGTSVHISLTFSNTMLQ 243
+T +PR N E+ LSL FFP+ V+G+ + F + L+
Sbjct: 125 VTNAPRSNA-ELMLSLLGLTEFFPVLVIGSECDRAKPFPDPYLK 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,338,161
Number of Sequences: 37544
Number of extensions: 269921
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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