Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5688
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    29   0.59 
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    28   1.8  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   3.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   7.3  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   9.7  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 798 PPLRKLIRIVHILVS*KTASNPLRDRLRQKGREFLIIKYLQ 676
           P +RK +RIVH  V  + AS PL  +L +K    L ++Y Q
Sbjct: 188 PKIRKPLRIVHPCVDIEAASKPLEFQLPEK---ILYLRYSQ 225


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 551 IIQPDSFPDVSARLLDDFVPVHVRKQAETKSLTIARVGESVDRD 420
           ++ P++ PD+   +LDDF+PV+  +  E  + T+       DRD
Sbjct: 519 LVNPEN-PDL---VLDDFIPVYTDETGEVDNATLEACYSIFDRD 558


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 246 DPMDHNDNMNLTRLSPSPGGLASEASPVLYHEPAF 350
           DP  +N   N + LS SPG ++S     ++  P F
Sbjct: 425 DPASYNALENRSELSASPGSVSSSRHSGIFATPTF 459


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 596 IEESLRHSAKTSPPYIIQPDSFPDVSARLLDDFVPVHVRKQAETKSLTI 450
           I ESL  S+KT PP+ I   S P    RLL    P H+ K+ +   L +
Sbjct: 508 INESLEASSKTRPPF-ISIISHPK-GMRLLPRLFP-HLSKEQQISILKV 553


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 482 EREQERSRRANAQTHRERSPAVLYRGVRSSRSA*ATPRYS 601
           +R QERS R+ ++  R+RSP   Y     S  +     YS
Sbjct: 158 KRRQERSARSVSERTRKRSPVSDYEEQNESEKSEEEEGYS 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,198
Number of Sequences: 5004
Number of extensions: 68157
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)