Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5688
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0757 + 24267599-24268882 33 0.20
09_03_0035 - 11765108-11765376,11765909-11766005,11766505-117665... 31 1.4
01_05_0781 + 25140652-25142010 30 2.5
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290 29 4.4
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 29 4.4
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 29 5.8
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 29 5.8
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 29 5.8
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622... 29 5.8
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946... 28 7.7
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 28 7.7
>06_03_0757 + 24267599-24268882
Length = 427
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 209 GDSAPRLHQRRWRPDGPQ*QHEPHTSKSVTWRPGVRGLAGAVPRA 343
G S + WRP GP P ++ WRP GL G P A
Sbjct: 338 GSSTGWVANPSWRPAGPWVCFNPWPAQQQAWRPSSAGLLGPAPTA 382
>09_03_0035 -
11765108-11765376,11765909-11766005,11766505-11766579,
11767367-11767650,11768466-11768562
Length = 273
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 482 EREQERSRRANAQTHRERSPAVLYRGVRSSRSA*ATPRYSCRVRTATSA 628
ERE++R RRA A RE P + G S S+ A+P + +A +A
Sbjct: 36 ERERDRRRRAAAAAAREPKPERMVFGRSKSSSSTASPPPAAAASSAAAA 84
>01_05_0781 + 25140652-25142010
Length = 452
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 284 SKSVTWRPGVRGLAGAVPRAGVLVQHQLLRAEHQGRGD 397
++ WR G LAG V R+G L ++ A H GD
Sbjct: 384 AERAVWRLGDEQLAGYVQRSGALANAVIVGAGHMAAGD 421
>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
Length = 377
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +2
Query: 146 RGYTCTTRAGQH--NCTRELLNSGDSAPRLHQRRWR--PDG 256
R Y C A H +CT G PR H RRW P+G
Sbjct: 45 RDYICFRAACHHWRSCTASPCGRGVVVPRFHPRRWMMLPEG 85
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 350 LVQHQLLRAEHQGRGDVPRLATFHHGRRIHRPE 448
L+Q +L + G G++P+ HHGR RPE
Sbjct: 573 LLQMLMLFSASMGTGEMPKGGLLHHGRDNLRPE 605
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 261 NDNMNLTRLSPSPGGLASEASPVLYHEPAFWCSISYYELNTR 386
NDN + L S GGL + AS ++ H P+F C + NTR
Sbjct: 663 NDNPSGCELIASCGGLNTMASLIMKHFPSF-CFVVDNNYNTR 703
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 333 YHEPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSN 485
+ +P F+ S L R + A+ PS+ G D N+ R+ +G LSN
Sbjct: 260 FFQPCFYIPPS---LRFRSTNGYAATPPSVGAKGAVDQKNARRYSVGPLSN 307
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 718 QSVSQGVRSRFSADQDVHNTNELSQGGGG 804
QS ++ V+ FS D+DV NEL GG G
Sbjct: 370 QSKNEEVKESFSEDKDVVVGNELHNGGQG 398
>01_06_0995 +
33661367-33661380,33661729-33661826,33662059-33662214,
33663307-33663926,33664020-33664090,33664176-33664427,
33664494-33664611,33664715-33664886,33664970-33665511
Length = 680
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 246 DPMDHND-NMNLTRLSPSPGGLASEASPVLYHEPAFWCSI-SYYELNTRVGETFHASQPS 419
DP D+ N+N R + GL + P Y++ F C+I + N + +H + PS
Sbjct: 522 DPFDYGSGNINPNRAADP--GLIYDIDPTDYNK-FFACTIKTSASCNATMLPRYHLNLPS 578
Query: 420 ITVDGFTDPSNSER 461
I V DP+ R
Sbjct: 579 IAVPDLRDPTTVSR 592
>08_02_0405 +
16790720-16791691,16792064-16792135,16794487-16794621,
16794630-16794758
Length = 435
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +2
Query: 146 RGYTCTTRAGQH--NCTRELLNSGDSAPRLHQRRWR--PDG 256
R Y C A H +CT G PR H RRW P+G
Sbjct: 49 RDYICFRAACHHWRSCTASPCGRGVVDPRFHPRRWMMLPEG 89
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 625 RYGWHPATVCKIPPGCNLKIF 687
RYGW+ T+ K PG +LK F
Sbjct: 801 RYGWYGLTLWKKAPGFSLKFF 821
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,294,543
Number of Sequences: 37544
Number of extensions: 585017
Number of successful extensions: 2049
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -