Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5688
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.        90   2e-18
U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3...    90   2e-18
U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.        89   3e-18
U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1 p...    89   3e-18
M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2...    89   3e-18
U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.        69   5e-12
U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4...    69   5e-12
Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical pr...    52   6e-07
AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein ...    52   6e-07
Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical pr...    45   6e-05
U00066-6|ABC71810.1|  189|Caenorhabditis elegans Small protein 4...    37   0.015
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    32   0.56 
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    32   0.56 
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    32   0.56 
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      32   0.56 
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      30   1.7  
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    28   6.9  
M77697-4|AAA27900.4|  493|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U34902-1|AAA97607.1|  393|Caenorhabditis elegans sma-3 protein.
          Length = 393

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 46/90 (51%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
 Frame = +3

Query: 288 SPSPGGLASEASPVLYHE-------PAFWCSISYYELNTRVGETFHASQPSITVDGFTDP 446
           SPSP   + +   V  H+       P  W  I+Y+ELN+RVGE F     SITVDG+T+P
Sbjct: 169 SPSPSVFSEDGGEVQVHQRPPPFRHPKSWAQITYFELNSRVGEVFKLVNLSITVDGYTNP 228

Query: 447 SNSE-RFCLGLLSNVNRNEVVEQTRRHIGK 533
           SNS  R CLG L+NVNRN  +E TR HIGK
Sbjct: 229 SNSNTRICLGQLTNVNRNGTIENTRMHIGK 258



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 583 SDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQS 723
           SD  +FVQS N N         VC+IPP   L +F    F  +L QS
Sbjct: 277 SDMPVFVQSKNTNLMMNMPLVKVCRIPPHSQLCVFEFNLFFQMLEQS 323


>U00046-9|AAC47050.2|  393|Caenorhabditis elegans Small protein 3
           protein.
          Length = 393

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 46/90 (51%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
 Frame = +3

Query: 288 SPSPGGLASEASPVLYHE-------PAFWCSISYYELNTRVGETFHASQPSITVDGFTDP 446
           SPSP   + +   V  H+       P  W  I+Y+ELN+RVGE F     SITVDG+T+P
Sbjct: 169 SPSPSVFSEDGGEVQVHQRPPPFRHPKSWAQITYFELNSRVGEVFKLVNLSITVDGYTNP 228

Query: 447 SNSE-RFCLGLLSNVNRNEVVEQTRRHIGK 533
           SNS  R CLG L+NVNRN  +E TR HIGK
Sbjct: 229 SNSNTRICLGQLTNVNRNGTIENTRMHIGK 258



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 583 SDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQS 723
           SD  +FVQS N N         VC+IPP   L +F    F  +L QS
Sbjct: 277 SDMPVFVQSKNTNLMMNMPLVKVCRIPPHSQLCVFEFNLFFQMLEQS 323


>U34778-1|AAA97606.1|  418|Caenorhabditis elegans sma-2 protein.
          Length = 418

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/65 (61%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +3

Query: 339 EPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPS-NSERFCLGLLSNVNRNEVVEQT 515
           E  FW ++SYYELNTRVGE    S  +IT+DGFTDP  N  +  LGL SNVNRN  +E T
Sbjct: 218 EEQFWATVSYYELNTRVGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRNATIENT 277

Query: 516 RRHIG 530
           RRHIG
Sbjct: 278 RRHIG 282



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 40/64 (62%)
 Frame = +1

Query: 559 GEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGV 738
           G +FA+C SDS+IFVQS NCN   G+H  TV KI   C+LKIF+ + F  LL     +G 
Sbjct: 294 GSLFAQCESDSAIFVQSSNCNYINGFHSTTVVKIANKCSLKIFDMEIFRQLLEDCSRRGF 353

Query: 739 RSRF 750
            + F
Sbjct: 354 DASF 357



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 725 SRRGFEAVFQLTRMCTIRMSFLKGGG 802
           SRRGF+A F L +M  IRMSF+KG G
Sbjct: 349 SRRGFDASFDLQKMTFIRMSFVKGWG 374


>U10327-1|AAC46583.1|  418|Caenorhabditis elegans MAD homolog 1
           protein.
          Length = 418

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/65 (61%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +3

Query: 339 EPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPS-NSERFCLGLLSNVNRNEVVEQT 515
           E  FW ++SYYELNTRVGE    S  +IT+DGFTDP  N  +  LGL SNVNRN  +E T
Sbjct: 218 EEQFWATVSYYELNTRVGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRNATIENT 277

Query: 516 RRHIG 530
           RRHIG
Sbjct: 278 RRHIG 282



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 40/64 (62%)
 Frame = +1

Query: 559 GEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGV 738
           G +FA+C SDS+IFVQS NCN   G+H  TV KI   C+LKIF+ + F  LL     +G 
Sbjct: 294 GSLFAQCESDSAIFVQSSNCNYINGFHSTTVVKIANKCSLKIFDMEIFRQLLEDCSRRGF 353

Query: 739 RSRF 750
            + F
Sbjct: 354 DASF 357



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 725 SRRGFEAVFQLTRMCTIRMSFLKGGG 802
           SRRGF+A F L +M  IRMSF+KG G
Sbjct: 349 SRRGFDASFDLQKMTFIRMSFVKGWG 374


>M98552-8|AAA28204.3|  418|Caenorhabditis elegans Small protein 2
           protein.
          Length = 418

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 40/65 (61%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +3

Query: 339 EPAFWCSISYYELNTRVGETFHASQPSITVDGFTDPS-NSERFCLGLLSNVNRNEVVEQT 515
           E  FW ++SYYELNTRVGE    S  +IT+DGFTDP  N  +  LGL SNVNRN  +E T
Sbjct: 218 EEQFWATVSYYELNTRVGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRNATIENT 277

Query: 516 RRHIG 530
           RRHIG
Sbjct: 278 RRHIG 282



 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 40/64 (62%)
 Frame = +1

Query: 559 GEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLSQSVSQGV 738
           G +FA+C SDS+IFVQS NCN   G+H  TV KI   C+LKIF+ + F  LL     +G 
Sbjct: 294 GSLFAQCESDSAIFVQSSNCNYINGFHSTTVVKIANKCSLKIFDMEIFRQLLEDCSRRGF 353

Query: 739 RSRF 750
            + F
Sbjct: 354 DASF 357



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 725 SRRGFEAVFQLTRMCTIRMSFLKGGG 802
           SRRGF+A F L +M  IRMSF+KG G
Sbjct: 349 SRRGFDASFDLQKMTFIRMSFVKGWG 374


>U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.
          Length = 570

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
 Frame = +3

Query: 351 WCSISYYELNTRVGETFHAS---QPSITVDGFTDP--SNSERFCLGLLSNVNRNEVVEQT 515
           WCSI YYEL+T +GETF  S      + VDG  DP   N  R CLG LSNV+R E  E+ 
Sbjct: 350 WCSIIYYELDTPIGETFKVSARDHGKVIVDGGMDPHGENEGRLCLGALSNVHRTEASEKA 409

Query: 516 RRHIGK 533
           R HIG+
Sbjct: 410 RIHIGR 415


>U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4,
           isoform a protein.
          Length = 565

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
 Frame = +3

Query: 351 WCSISYYELNTRVGETFHAS---QPSITVDGFTDP--SNSERFCLGLLSNVNRNEVVEQT 515
           WCSI YYEL+T +GETF  S      + VDG  DP   N  R CLG LSNV+R E  E+ 
Sbjct: 345 WCSIIYYELDTPIGETFKVSARDHGKVIVDGGMDPHGENEGRLCLGALSNVHRTEASEKA 404

Query: 516 RRHIGK 533
           R HIG+
Sbjct: 405 RIHIGR 410


>Z81055-6|CAB02890.3|  287|Caenorhabditis elegans Hypothetical
           protein F01G10.8 protein.
          Length = 287

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
 Frame = +3

Query: 237 EDGDPMDHNDNMNLTRLSP-SPGGLASEASP----VLYHEPAF------WCSISYYELNT 383
           E+ DP   ++  + + L P +P     E  P    +L  EP +      WC+I YYEL  
Sbjct: 41  ENNDPFPFSNISSQSSLKPKTPEKAVVEVRPTGNEMLDPEPKYPKEEKPWCTIFYYELTV 100

Query: 384 RVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRHIG 530
           R+G+ F A  P+IT+DG T  S+  R  L    + +RN    Q R  +G
Sbjct: 101 RLGKAFEAKVPTITIDGATGASDECRMSLTSQPS-SRNSKSSQIRNTVG 148


>AF190910-1|AAF03892.1|  287|Caenorhabditis elegans Smad protein
           protein.
          Length = 287

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
 Frame = +3

Query: 237 EDGDPMDHNDNMNLTRLSP-SPGGLASEASP----VLYHEPAF------WCSISYYELNT 383
           E+ DP   ++  + + L P +P     E  P    +L  EP +      WC+I YYEL  
Sbjct: 41  ENNDPFPFSNISSQSSLKPKTPEKAVVEVRPTGNEMLDPEPKYPKEEKPWCTIFYYELTV 100

Query: 384 RVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRHIG 530
           R+G+ F A  P+IT+DG T  S+  R  L    + +RN    Q R  +G
Sbjct: 101 RLGKAFEAKVPTITIDGATGASDECRMSLTSQPS-SRNSKSSQIRNTVG 148


>Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical
           protein R05D11.1 protein.
          Length = 546

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +3

Query: 327 VLYHEPAFWCSISYYELNTRVGETFHASQPSITVDGF----TDPSNSERFCLGLLSNVNR 494
           V Y E   W  + YYE  T +GE          +DGF    TD     RF LG  +N NR
Sbjct: 341 VEYEESPSWLKLIYYEEGTMIGEKADVEGHHCLIDGFTASRTDSETRSRFSLGWYNNPNR 400

Query: 495 NEVVEQTRRHIGK 533
           +    + R  IGK
Sbjct: 401 SPQTAEVRGLIGK 413



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +1

Query: 559 GEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALL 714
           GEV+ E L +  +FVQS   N + G+   TV K+PP   +K+F+ + F+  L
Sbjct: 422 GEVYVENLCNIPVFVQSIGANMKNGFQLNTVSKLPPTGTMKVFDMRLFSKQL 473



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +2

Query: 716 RSRSRRGFEAVFQLTRMCTIRMSFLKGGG 802
           R+ + + ++ V+ L+RMCT+R+SF KG G
Sbjct: 474 RTAAEKTYQDVYCLSRMCTVRVSFCKGWG 502


>U00066-6|ABC71810.1|  189|Caenorhabditis elegans Small protein 4,
           isoform b protein.
          Length = 189

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 450 NSERFCLGLLSNVNRNEVVEQTRRHIGK 533
           N  R CLG LSNV+R E  E+ R HIG+
Sbjct: 7   NEGRLCLGALSNVHRTEASEKARIHIGR 34


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 351 WCSISYYELNTRVGETFHASQPSITVD-GFTDPSNSERFCLGLLSNVNRNEVVEQTRRHI 527
           W +I YYE N ++GE    S+ +  VD GF    N  R+ LGL  N  R  V  + R+ I
Sbjct: 561 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPVAFKVRKAI 617


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 351 WCSISYYELNTRVGETFHASQPSITVD-GFTDPSNSERFCLGLLSNVNRNEVVEQTRRHI 527
           W +I YYE N ++GE    S+ +  VD GF    N  R+ LGL  N  R  V  + R+ I
Sbjct: 657 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPVAFKVRKAI 713


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 351 WCSISYYELNTRVGETFHASQPSITVD-GFTDPSNSERFCLGLLSNVNRNEVVEQTRRHI 527
           W +I YYE N ++GE    S+ +  VD GF    N  R+ LGL  N  R  V  + R+ I
Sbjct: 629 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPVAFKVRKAI 685


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 351 WCSISYYELNTRVGETFHASQPSITVD-GFTDPSNSERFCLGLLSNVNRNEVVEQTRRHI 527
           W +I YYE N ++GE    S+ +  VD GF    N  R+ LGL  N  R  V  + R+ I
Sbjct: 561 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPVAFKVRKAI 617


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
            F26A3.8 protein.
          Length = 1601

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 330  LYHEPAFWCSISYYEL--NTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEV 503
            ++HE A     +YY +  N R  E   +S P+IT +  T     E F + L  N+N N++
Sbjct: 1462 IFHESALK---TYYNILFNLRFEELPVSSDPTITAE--TMDRECEPFVIELPENINVNDL 1516

Query: 504  VEQTRRH 524
            +   ++H
Sbjct: 1517 INNMKKH 1523


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 330  LYHEPAFWCSISYYEL--NTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEV 503
            ++HE A     +YY +  N R  E   +S P+IT +  T     E F + L  N+N N++
Sbjct: 1462 IFHESALK---TYYNILFNLRFEELPVSSDPTITAE--TMDRECEPFVIELPENINVNDL 1516

Query: 504  VEQTRRH 524
            +   ++H
Sbjct: 1517 INNMKKH 1523


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 694 QEFAALLSQSVSQGVRSRFSADQDVHNTNELSQG 795
           Q   ALL+Q++++G  +     Q+VHN NE  +G
Sbjct: 65  QNRLALLNQALNRGQLTHEQFQQEVHNVNERIRG 98


>M77697-4|AAA27900.4|  493|Caenorhabditis elegans Hypothetical
           protein B0303.7 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 560 VRSSRSA*ATPRYSCRVRTATSAMAGIRPPFVKYHQVAT*RYLIIKNSRPF 712
           V SS S+ ATP Y     ++ S+ A + PP V  H  +   Y     S P+
Sbjct: 145 VMSSNSSTATPSYQSNSTSSYSSSAPVAPPPVPRHTQSIPSYSAPAISTPY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,455,429
Number of Sequences: 27780
Number of extensions: 433716
Number of successful extensions: 1317
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)