Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5688
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    28   0.12 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 506 DDFVPVHVRKQAETKSLTIARVGESVDRDGRLRGVERLP-DPGVQLVVADAAPE 348
           D+ +P +++ +  T+   ++RVG    R G L  VER P  P     +  AA E
Sbjct: 183 DEVMPYYLKSENNTE---LSRVGTKYHRSGGLMNVERFPYQPPFAWKILKAAEE 233


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 766 HPGQLKNGFEP 734
           HPGQ+ NG+ P
Sbjct: 349 HPGQISNGYTP 359


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 766 HPGQLKNGFEP 734
           HPGQ+ NG+ P
Sbjct: 60  HPGQISNGYTP 70


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 766 HPGQLKNGFEP 734
           HPGQ+ NG+ P
Sbjct: 349 HPGQISNGYTP 359


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 170 HVLCKCSLEIQCAVSCTRLHGN 105
           H+L K +L +   V C + +GN
Sbjct: 308 HILQKTTLNMLTQVECYKYYGN 329


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +3

Query: 12  IRHEGRCSEGEVRAPPPYADYHQPILHEHPDVAMQSGTGHS 134
           + H+G   +G    P   +  H  +  +HP +  Q G   S
Sbjct: 148 VDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQS 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,065
Number of Sequences: 438
Number of extensions: 5109
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)