Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5687
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.2  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 213 KVKCELEYLLEQCLRSIQYN*S*DLFLYEIGRTEARTKLFD 335
           K  C LE   + CL++I+ N + DL +   G     TK ++
Sbjct: 414 KYDCTLEKSQDDCLKAIKEN-NADLTVVSGGSVLRATKEYN 453


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 213 KVKCELEYLLEQCLRSIQYN*S*DLFLYEIGRTEARTKLFD 335
           K  C LE   + CL++I+ N + DL +   G     TK ++
Sbjct: 414 KYDCTLEKSQDDCLKAIKEN-NADLTVVSGGSVLRATKEYN 453


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 213 KVKCELEYLLEQCLRSIQYN*S*DLFLYEIGRTEARTKLFD 335
           K  C LE   + CL++I+ N + DL +   G     TK ++
Sbjct: 414 KYDCTLEKSQDDCLKAIKEN-NADLTVVSGGSVLRATKEYN 453


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  IGTYARGANDTSL 110
           +GT+ R  NDTS+
Sbjct: 96  LGTHGRQCNDTSI 108


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 72  IGTYARGANDTSL 110
           +GT+ R  NDTS+
Sbjct: 97  LGTHGRQCNDTSI 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,838
Number of Sequences: 438
Number of extensions: 1620
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)