Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5686
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.19 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.78 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   2.4  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   4.2  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    26   4.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.6  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 26/83 (31%), Positives = 32/83 (38%)
 Frame = -1

Query: 254 SSGFTIGPSMEVSTVRSSLVLK*WPSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGC 75
           SS  +  P+   ST+ SS      P+ T +  S S   SS    T SSS MS     S  
Sbjct: 276 SSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSS 335

Query: 74  PLSRYQATKCVPACPSSEGIQRT 6
           P S         + PSS     T
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSST 358


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 572  YCPMKEPSSFMPAVSPSPYSAIESVSLSGPGLVPLLIEWRDL 447
            Y P+   S +     P+P   I ++SL   GL+ +L+EW DL
Sbjct: 1896 YVPILIDSLYKFGAIPNPNPEIRALSL---GLIKVLLEWNDL 1934


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = +1

Query: 442 DNKSRHSMSSGTKPGPESDTDSMAEYGDGETAGMNEDGSFIGQYGRETTSANIPASRTQP 621
           +N S  +  S    G    +++   YG   T G N   +  G YG   ++ +   S T  
Sbjct: 51  NNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYSITPI 110

Query: 622 R 624
           R
Sbjct: 111 R 111


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 538 GMNEDGSFIGQYGRETTSANIPASRTQP 621
           G+N + +F G  GR TT  ++P     P
Sbjct: 487 GLNANPTFFGCDGRNTTRGDVPVDHNTP 514


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 566 PMKEPSSFMPAVSPSPYSAIESVSLSGPGLVP 471
           PM  P+S +   SP P  ++ +  +S P L P
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNP 489


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +1

Query: 64  RLKGHPDWQRTNDITEDDFVILTGLEPGQLYEVKVTVHDGHYFSTSELRTVDTSIDGPIV 243
           + K  P    T D  ++ + +L+  +  Q Y++K      HY+S  +L   +   +G   
Sbjct: 35  KCKEKPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDLSEFEELDNGSYY 94

Query: 244 KP 249
            P
Sbjct: 95  YP 96


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -1

Query: 272 PAVAIFSSGFTIGPSMEVSTVRSSLVLK*WPSCTVTLTSYSWP--GSSPVRITKSSSVMS 99
           PA + F +      S + S+  +SL      S T+T +S + P   SS   ++ SSS + 
Sbjct: 74  PASSSFITSLVSSSSQQSSSSSASLTSS--SSATLTSSSSASPTSSSSSHALSSSSSSLV 131

Query: 98  LVRCQSGCPLSRYQATKCVPACPSS 24
                SG   S    +  VP+  SS
Sbjct: 132 ASSSSSGMSSSSLSHSSSVPSSSSS 156


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 147 PAVRGQGHGARRPLLQHQRAADGRHLHRRTDSEAG 251
           P V   G+G      Q+QR     H+ RR D+  G
Sbjct: 62  PLVTNNGNGNSNVSTQYQRLTPREHVLRRPDTYIG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,011
Number of Sequences: 5004
Number of extensions: 34012
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)