SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5686
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu...    56   2e-08
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu...    56   2e-08
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu...    52   4e-07
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu...    52   4e-07
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO...    52   4e-07
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR...    52   4e-07
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    32   0.41 
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    32   0.41 
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    32   0.41 
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    32   0.41 
AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    32   0.41 
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    32   0.41 
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    32   0.41 
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    31   0.72 
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    28   6.7  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    28   6.7  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    28   6.7  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    28   6.7  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    28   6.7  
AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    27   8.9  
AF016451-3|AAB66001.1|  388|Caenorhabditis elegans Prion-like-(q...    27   8.9  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006672-8|AAY43997.1|  125|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform a protein.
          Length = 1144

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 35/77 (45%), Positives = 44/77 (57%)
 Frame = +1

Query: 343  RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 522
            R RG  Y V  RE   GR   P  G  +Y    D+  + S++ G+K   ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106

Query: 523  DGETAGMNEDGSFIGQY 573
            D +     EDGSFIGQY
Sbjct: 1107 DTDPGVFTEDGSFIGQY 1123


>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform b protein.
          Length = 1328

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 35/77 (45%), Positives = 44/77 (57%)
 Frame = +1

Query: 343  RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 522
            R RG  Y V  RE   GR   P  G  +Y    D+  + S++ G+K   ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290

Query: 523  DGETAGMNEDGSFIGQY 573
            D +     EDGSFIGQY
Sbjct: 1291 DTDPGVFTEDGSFIGQY 1307


>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform d protein.
          Length = 1147

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 343  RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 522
            R RG  Y V  RE   GR   P  G  +Y    D+  + S++ G+K   ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106

Query: 523  DGETAGMNEDGSFIGQYGRETTSANI-PASRTQ 618
            D +     EDGSFI   G+     ++ PA R +
Sbjct: 1107 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPE 1139


>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
            guidance protein 7,isoform c protein.
          Length = 1331

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 343  RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 522
            R RG  Y V  RE   GR   P  G  +Y    D+  + S++ G+K   ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290

Query: 523  DGETAGMNEDGSFIGQYGRETTSANI-PASRTQ 618
            D +     EDGSFI   G+     ++ PA R +
Sbjct: 1291 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPE 1323


>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
            protein.
          Length = 1147

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 343  RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 522
            R RG  Y V  RE   GR   P  G  +Y    D+  + S++ G+K   ES+TDSMA+YG
Sbjct: 1054 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1106

Query: 523  DGETAGMNEDGSFIGQYGRETTSANI-PASRTQ 618
            D +     EDGSFI   G+     ++ PA R +
Sbjct: 1107 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPE 1139


>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
            protein.
          Length = 1331

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +1

Query: 343  RNRGGKYDVHDRELAHGRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEYG 522
            R RG  Y V  RE   GR   P  G  +Y    D+  + S++ G+K   ES+TDSMA+YG
Sbjct: 1238 RQRGQNYPVSQREREQGRE--PILGKPDYK--TDDDEKRSLT-GSKA--ESETDSMAQYG 1290

Query: 523  DGETAGMNEDGSFIGQYGRETTSANI-PASRTQ 618
            D +     EDGSFI   G+     ++ PA R +
Sbjct: 1291 DTDPGVFTEDGSFIAVSGQYVPQKSLMPAERPE 1323


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
             K07E12.1b protein.
          Length = 12268

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +1

Query: 391   GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 564
             G   YP  G  E   P DN  +         G    TDS   +  GDG     NE+G  I
Sbjct: 10873 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10932

Query: 565   GQYGRETTSAN 597
             G  G+  T+ N
Sbjct: 10933 GPDGQVLTTDN 10943


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +1

Query: 391   GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 564
             G   YP  G  E   P DN  +         G    TDS   +  GDG     NE+G  I
Sbjct: 10918 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10977

Query: 565   GQYGRETTSAN 597
             G  G+  T+ N
Sbjct: 10978 GPDGQVLTTDN 10988


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = +1

Query: 391   GRRDYPDAGFHEYTHPLDNKSRHSMSSGTKPGPESDTDSMAEY--GDGETAGMNEDGSFI 564
             G   YP  G  E   P DN  +         G    TDS   +  GDG     NE+G  I
Sbjct: 10918 GNYIYPAVGSDEKILPTDNLGKVVYPITRPDGSPLATDSTGVFVTGDGTIVERNEEGKPI 10977

Query: 565   GQYGRETTSAN 597
             G  G+  T+ N
Sbjct: 10978 GPDGQVLTTDN 10988


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V +   C        YQ  AT+C PAC  S
Sbjct: 37  PSCSCQRTTYTQPQQYSCSCQNTAPVQTSCSCAQPVQQLTYQVQATQCAPACQQS 91


>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V +   C        YQ  AT+C PAC  S
Sbjct: 37  PSCSCQRTTYTQPQQYSCSCQNTAPVQTSCSCAQPVQQLTYQVQATQCAPACQQS 91


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V +   C        YQ  AT+C PAC  S
Sbjct: 37  PSCSCQRTTYTQPQQYSCSCQNTAPVQTSCSCAQPVQQLTYQVQATQCAPACQQS 91


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V +   C        YQ  AT+C PAC  S
Sbjct: 37  PSCSCQRTTYTQPQQYSCSCQNTAPVQTSCSCAQPVQQLTYQVQATQCAPACQQS 91


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V +   C        YQ  A++C PAC  S
Sbjct: 39  PSCSCQQTTYAQPPQYSCSCQNTAPVQTSCSCAQPVQQQTYQVQASQCAPACQQS 93


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V     C        YQ  A++C PAC  S
Sbjct: 37  PSCSCQRTTYTQPQQYSCSCQNTAPVQKSCSCAQPVQQQTYQIQASQCAPACQQS 91


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 182 PSCTVTLTSYSWPGSSPVRITKSSSVMSLVRCQSGCPLSRYQ--ATKCVPACPSS 24
           PSC+   T+Y+ P         ++ V     C        YQ  A++C PAC  S
Sbjct: 37  PSCSCQRTTYTQPQQYSCSCQNTAPVQKSCSCAQPVQQQTYQIQASQCAPACQQS 91


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 1   VIVRWIPSLDGHAGTHFVAWYRLKGHPDW-QRTNDITEDDFV-----ILTGLEPGQLYEV 162
           V++RW   +    G  +  WY +   P   QR N++   DF+     ++TGL+   LYE 
Sbjct: 408 VMLRWSAPIYVDEGKRY--WYTITYKPRTPQRRNNVVAVDFINKDRYLVTGLKSFTLYEF 465

Query: 163 KVTV 174
            V V
Sbjct: 466 SVYV 469


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +1

Query: 61   YRLKGHPDWQR--TNDITEDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDT 222
            + L G  +W       +T     ++  L+PG LY +KV  +     G +  + E+RT  +
Sbjct: 3181 FELVGLDEWNEGTREGVTPRQNTLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGS 3240

Query: 223  SIDGP 237
             +  P
Sbjct: 3241 ELGPP 3245


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +1

Query: 61   YRLKGHPDWQR--TNDITEDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDT 222
            + L G  +W       +T     ++  L+PG LY +KV  +     G +  + E+RT  +
Sbjct: 3181 FELVGLDEWNEGTREGVTPRQNTLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGS 3240

Query: 223  SIDGP 237
             +  P
Sbjct: 3241 ELGPP 3245


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +1

Query: 61   YRLKGHPDWQR--TNDITEDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDT 222
            + L G  +W       +T     ++  L+PG LY +KV  +     G +  + E+RT  +
Sbjct: 3181 FELVGLDEWNEGTREGVTPRQNTLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGS 3240

Query: 223  SIDGP 237
             +  P
Sbjct: 3241 ELGPP 3245


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +1

Query: 61   YRLKGHPDWQR--TNDITEDDFVILTGLEPGQLYEVKVTVH----DGHYFSTSELRTVDT 222
            + L G  +W       +T     ++  L+PG LY +KV  +     G +  + E+RT  +
Sbjct: 3181 FELVGLDEWNEGTREGVTPRQNTLIDQLQPGSLYRIKVRAYTAEGPGPWSDSLEIRTTGS 3240

Query: 223  SIDGP 237
             +  P
Sbjct: 3241 ELGPP 3245


>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 466 SSGTKPG---PESDTDSMAEYGDGETAGMNEDGSFIGQYGRETTSANIPASRTQP 621
           +SGT+ G   P      M       +  ++  GSF  QY   TT+ N+ A+  QP
Sbjct: 387 ASGTEQGSSFPSGLNGKMVASSSINSVEISSIGSFAIQYHLNTTTTNLEATTNQP 441


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 92  RCQSGCPLSRYQATKCVPAC 33
           +CQS C   + Q+ +C PAC
Sbjct: 204 QCQSSCVQQQQQSNQCEPAC 223


>AF016451-3|AAB66001.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 5
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 92  RCQSGCPLSRYQATKCVPAC 33
           +CQS C   + Q+ +C PAC
Sbjct: 204 QCQSSCVQQQQQSNQCEPAC 223


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +3

Query: 69  QGAPRLAADQRHHRGRLRDPDGAGARPAVRGQGHGARRPLLQHQRAADGRHLHRRTD--S 242
           +GA R  + ++HH       D    R       H   R   +H+R  D RH   R++   
Sbjct: 270 RGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHKEHRR--DDRHRSERSERSE 327

Query: 243 EAGREDRDR 269
            + R DR+R
Sbjct: 328 RSERSDRER 336


>AC006672-8|AAY43997.1|  125|Caenorhabditis elegans Hypothetical
           protein K08D12.7 protein.
          Length = 125

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 21  LARRTRGDALRG---LVPAQGAPRLAADQRHHRGRLRDPDGAGARPAVRGQGHGARR 182
           L R+ R D   G   + PA G  R+A+           P+GAGA+  V   G+  +R
Sbjct: 25  LTRKRRADNSYGDEAVTPAGGGARVASMAVEEAPATVAPEGAGAQSNVESSGYRKKR 81


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 167 TLTSYSWPGSSPVRITKSSSVM-SLVRCQSGCPLSRYQATKCVPA 36
           T +  S P  S  ++++S  +  S +R  +G  +SRY+++ C PA
Sbjct: 301 TPSPLSLPSPSGGQMSRSRDLTRSSLRAPAGISISRYRSSSCAPA 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,653
Number of Sequences: 27780
Number of extensions: 209238
Number of successful extensions: 1014
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)

- SilkBase 1999-2023 -