Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5686
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.64 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 273 ARGRDLLVRLHYRSVYGGVDRPQLAGAEVVAVVHRDLDLVQLAGLQP 133
           AR   LLV LH  S+Y G    ++AG     V+  D   + L GL P
Sbjct: 21  ARMLALLVSLHRLSIYSGGSDWRVAGRSESVVIPGD---IVLGGLFP 64


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 192 EVVAVVHRDLDLVQLAGLQ 136
           E VAV+H+DL +  + GL+
Sbjct: 124 EAVAVIHKDLPINNVQGLR 142


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 192 EVVAVVHRDLDLVQLAGLQ 136
           E VAV+H+DL +  + GL+
Sbjct: 124 EAVAVIHKDLPINNVQGLR 142


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 192 EVVAVVHRDLDLVQLAGLQ 136
           E VAV+H+DL +  + GL+
Sbjct: 124 EAVAVIHKDLPINNVQGLR 142


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 37  AGTHFVAWYR 66
           AG HF+ WY+
Sbjct: 360 AGPHFITWYK 369


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 37  AGTHFVAWYR 66
           AG HF+ WY+
Sbjct: 360 AGPHFITWYK 369


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 46  HFVAWYRLKGHPDWQRTNDITED 114
           ++  WY  K +   QR N  TED
Sbjct: 203 NYTGWYLTKHNVPEQRLNYFTED 225


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 46  HFVAWYRLKGHPDWQRTNDITED 114
           ++  WY  K +   QR N  TED
Sbjct: 203 NYTGWYLTKHNVPEQRLNYFTED 225


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 560 KEPSSFMPAVSPSPYSAIESVSLSGP 483
           ++PSS  P   PSP+ + ++     P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSP 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,255
Number of Sequences: 438
Number of extensions: 2218
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)