Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5685
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 36 0.027
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 30 2.4
01_07_0107 - 41118897-41120036 29 5.4
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 28 7.2
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 28 7.2
04_04_0673 - 27168305-27168874,27168977-27169099,27169180-271694... 28 7.2
03_06_0689 + 35564143-35564643,35565994-35566452,35566553-35567176 28 7.2
06_03_1242 - 28618752-28618980,28619457-28619797 28 9.5
04_04_0773 - 27974909-27977191 28 9.5
04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095 28 9.5
03_05_0896 - 28592658-28593331,28594069-28595455 28 9.5
02_05_0053 - 25442186-25443189,25444359-25444914 28 9.5
02_03_0188 + 16173801-16173910,16174045-16174402 28 9.5
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 9.5
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 36.3 bits (80), Expect = 0.027
Identities = 25/96 (26%), Positives = 45/96 (46%)
Frame = +1
Query: 151 AKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRY 330
AK+D G S+ + I + D + V++R ++KLA+ +LG ++ +
Sbjct: 86 AKEDALCTKNMVPGESVYGEKRISVQNED-GTKVEYRVWNPFRSKLAAAVLGGVDNI--W 142
Query: 331 FTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPF 438
PG R+L V + S + +P+Y +LPF
Sbjct: 143 IAPGTRVLYLGGASGTTVSHVSDIVGPSPRYAILPF 178
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 535 RGNRSPSADPEAPNDP*EWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPRE 377
RG++SPS PE P D R SE S+V + E+ + P S P E
Sbjct: 312 RGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPPVE 360
>01_07_0107 - 41118897-41120036
Length = 379
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -2
Query: 254 WTSLEMSTPSIPILSDGC-----RDTPWNCGAMTKG 162
W++ + ++P SD C +D PWNC + T G
Sbjct: 19 WSTCLAAHSTVPCRSDVCAAAAVQDNPWNCSSSTDG 54
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 621 AVRW*KRDVGIISNKLLRALPMEHTVQNTEGTEVPP 514
A +W ++ V SN++ + L H EGTE PP
Sbjct: 556 APQWRQQKVQDYSNRVSQRLDTSHLSDRAEGTEQPP 591
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 673 HSAFPEIFFCHVP 711
HS PE FFCHVP
Sbjct: 196 HSQSPEAFFCHVP 208
>04_04_0673 -
27168305-27168874,27168977-27169099,27169180-27169440,
27169723-27169970,27170403-27170483,27171530-27171902
Length = 551
Score = 28.3 bits (60), Expect = 7.2
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Frame = -2
Query: 689 SGNALWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTNSSEH--SPWNIRYKIQREPKSL 516
SG A+++ PGSM S GG DG L S +PW K + P +
Sbjct: 22 SGEAVFVKQRRPGSMAG--SPGGALDGWRWRLGSKAATMDGRPMAPWR---KGEAAPSAD 76
Query: 515 RRPRGSK--RSVRM-GLSTIRT-ALLCMESNGRSWYLGAPAQRW 396
SK R R G T + +LC + +SWYL P W
Sbjct: 77 VTGAQSKLRRGCRAKGYHTCYSDRILCKRMDRQSWYLLVPGTSW 120
>03_06_0689 + 35564143-35564643,35565994-35566452,35566553-35567176
Length = 527
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 527 PKSLRRPRGSKRSVRMGLSTIRTALLCMESNGRSWYLGAPAQRWEQ 390
P +L PR + R VR+G + M + +W +G A RWE+
Sbjct: 392 PATLLMPRETMRDVRIGGYEVAARTRVMVN---AWAIGRDAARWEE 434
>06_03_1242 - 28618752-28618980,28619457-28619797
Length = 189
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = -1
Query: 516 PQTQRLQTIRENGIIDNPNGPPL-------YGVKWKKLVFGSPGPEM 397
P R+ R N I+ P PPL YG W F +PGP +
Sbjct: 105 PSGPRINNSRTNIYINPPVAPPLVGGYGYGYGYGWSPFSFFAPGPSV 151
>04_04_0773 - 27974909-27977191
Length = 760
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -1
Query: 522 VPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFGSPGPEMGAVL 385
VP QT LQT + PP G +W G G G ++
Sbjct: 97 VPDQTHTLQTTHTPQFLGLSAPPPPQGKRWSSSSHGGSGAGAGVIV 142
>04_03_0758 + 19322891-19323193,19323606-19323778,19324778-19326095
Length = 597
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 249 CPVSESFGRQSQVGVQNAGSPQQSEAVLHAWTKAFAL*STSPASRGVLL 395
C E+ +Q + A PQQ++ V T A A + SPA RG +
Sbjct: 94 CAEGEAAAQQPTLAPPPAQQPQQNQGVGFGGTGAGAATTVSPAPRGTTM 142
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 624 ATGVEFIHTTWSHCGHPQCVSRNLFLPRTIPA 719
A GVE+IH+T S H S N+ L ++ A
Sbjct: 485 ARGVEYIHSTSSSASHGNIKSSNVLLNKSYQA 516
>02_05_0053 - 25442186-25443189,25444359-25444914
Length = 519
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 503 GSKRSVRMGLSTIRTALLCMESNGRSWYLGAPAQRWEQYSTRGRTCA 363
G + +GL L + + SW G PA +QYS RG+ A
Sbjct: 351 GEITELAVGLEATGRPFLWVLKDDPSWRAGLPAGYTDQYSGRGKIVA 397
>02_03_0188 + 16173801-16173910,16174045-16174402
Length = 155
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 171 HGATIPRSIPATVREYWDT-WGRHFERCPVSESFGRQSQVGVQNAGSPQQSE 323
HG + R PA R++W W RH E PV+ Q G GS Q+S+
Sbjct: 58 HGWRLRR--PARHRQWWRRGWLRHEEAWPVAAVVVPQECRGAIGKGSDQRSD 107
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 287 WRPKCWESSTERSGTSRLDKGFCFIKHKSGLAWSTAPISGPGLPNTSFFHLTPYRGGP 460
WRP+ SS+ + KG +H S P+S P P + +PY+ P
Sbjct: 34 WRPRSSPSSSLLRNKGKGKKGSSNRQHGSNRPSPKPPLSPPPSPGNGKGYQSPYQPSP 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,171,021
Number of Sequences: 37544
Number of extensions: 635275
Number of successful extensions: 1956
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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