Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5684
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 34 0.12
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 32 0.37
11_06_0046 - 19585032-19585109,19585198-19585278,19585460-195855... 30 2.0
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 29 2.6
12_02_0589 + 20850249-20850491,20850583-20851839 29 3.4
09_02_0082 - 4060018-4061604 29 3.4
05_04_0057 + 17543016-17543312 29 3.4
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 3.4
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.5
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 4.5
02_02_0183 + 7576901-7576908,7577666-7578176 29 4.5
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 28 6.0
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 28 6.0
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 28 7.9
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 28 7.9
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 28 7.9
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 641 NGSRWGNRTRGQRPRDRCNIYGNLRDERDG*TSQRWRP---HRGAGQPNPFATSSFLHSG 471
NG+ G+R+R PRDR + G+L G TS R P HR GQ + SF G
Sbjct: 142 NGNGKGSRSRSAHPRDRYSGGGHLYGGGGGYTSDRGPPTCSHRYDGQSSKEHGDSFYSGG 201
Query: 470 T*SAHMQT 447
S T
Sbjct: 202 NSSKFADT 209
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 18 TLVPGLSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 155
TL+ L+S F+ ++GR C PR + PR L +L SPH+L
Sbjct: 324 TLLRNLTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371
>11_06_0046 -
19585032-19585109,19585198-19585278,19585460-19585501,
19586058-19586149,19586243-19586312,19587140-19587223,
19587696-19587770,19587878-19587949,19588082-19588331,
19590224-19590291,19590380-19590460,19590642-19590683,
19591240-19591331,19591425-19591494,19592322-19592405,
19592878-19592952,19593060-19593131,19593264-19593305
Length = 489
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 414 QPRTCLRQRVPRLHVG*SGSGVQKRRSSKRIRLPSPPVRSP 536
+P C + +P+LH+ S ++RR S + LPSPP P
Sbjct: 228 EPFICFARYLPQLHLSTSSRHRRRRRGSPPL-LPSPPPPPP 267
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 290 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPAS 451
G + +PQ+ +VR CT+ SL + SA GTA T + A SA +T S +S
Sbjct: 47 GGTPAPQAAASSVRRCTSPSLSRASAA-EGTASTNR--AQSAERRRSSTPSSSS 97
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 298 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRRFSVRLHRCRTSSI 161
A SSL T S S R ++ +WR+ R+ R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 510 LPSPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSGTVFKIG 653
+P+P + SPT+ VT P A ++ + + T++P+ T + G
Sbjct: 429 VPTPSMPSPTVPAPPVTAAPATAPSVAAPAAVSHGLTLSPTTTRYSFG 476
>05_04_0057 + 17543016-17543312
Length = 98
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 463 DQVPECKNEEVANGFGCPAPR*GLQRWLVQPSRSSRR-LP*ILHL 594
D VP EV + G P R G + WL+ PSR+ RR P ++HL
Sbjct: 38 DSVPSLVEVEV-DRCGPPGRRGGRRWWLLCPSRAGRRGKPAMVHL 81
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 277 ECGERTQLEPPISTPHCSRLYGIF 348
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 283 RTQRCEGSRSSRSSIWNLWRRKRDR 209
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 510 LPSPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSGTVFKIG 653
+P+P + PT+ VT+ P A ++ + + A TV+P+ T + G
Sbjct: 538 IPTPSMPFPTVPAPPVTVPPATAPSMAAPAAASHGLTVSPTMTRYSFG 585
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 307 GAQAVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRR 200
G V + +R EG S + W WRR+R RC R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR-RCGR 142
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 212 VSLSTPQIPNXXXXXXXXXXXLSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGT 391
+ S+P +PN AER +LS Q+P+++ + S M S G
Sbjct: 290 IGRSSPSVPNPPLGPR------GAERSSNLSSQTPVISSSGLSYGSGMHVGNANSRVNGN 343
Query: 392 EKPPAISAAP---DLPTTE 439
P + P D+P TE
Sbjct: 344 SVQPTVELLPSFKDVPNTE 362
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 275 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDL 427
L RG SP P T+S SAT +GT G + PP + + PD+
Sbjct: 33 LGLSRGAGPSPPPP---PSSSTSSFPAAASATAAGTGG-DAPPIVGSCPDM 79
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 398 PPAISAAPDLPTTESPASACGLIRFRSAKTK-K*QTDSAAQPPGEVSNAGSFSRHAH 565
P A S+ P LP PASA L+R RS+ TK K + A PP + A + S +H
Sbjct: 66 PHAPSSRPPLP----PASAA-LLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSH 117
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 382 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEV 495
CW G + RY+CSP VCM ++P + +
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRL 111
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 362 SATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRS-AKTKK*QTDSAAQPP--GEV 532
SA G+ EKP S A + +P+ + L+ FRS ++ KK + A+PP G+
Sbjct: 690 SADDHGSPQREKPRTTSTAGGVKRDVAPSWSSRLLAFRSFSRDKKAKATVDARPPAHGKA 749
Query: 533 SNAGSFSRHAHPEDCRKYY 589
+ G + E ++++
Sbjct: 750 RDEGDEHKEKGKERRKRFW 768
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,709,529
Number of Sequences: 37544
Number of extensions: 472108
Number of successful extensions: 1881
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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