Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5683
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    29   0.70 
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   2.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.8  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   6.6  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    26   6.6  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   8.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   8.7  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 454 LRLPSAPISATLMNLPLLFCFTSK*KRFD 368
           +R+P AP    L+N P+   F  K  RFD
Sbjct: 313 IRIPRAPAEFLLLNQPIFQAFNKKCSRFD 341


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 625 KENSRGRFLRVSQTITRG 678
           K+N RG+F +VS TIT+G
Sbjct: 12  KKNGRGKFPKVSNTITQG 29


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 680  PPRVMVWETRRNRPREFSFRSKIVPTVVLKHHFRLEFS 567
            PP   VW  R + P+ FS   ++ P   L H  + +FS
Sbjct: 1246 PPSSSVWNKREHHPKPFSLH-QVPPPESLIHKSKSKFS 1282


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 169  SFVSKHSSNTTHTFLCSWFKTVY 101
            SFVSK  SNTT+ FL   +K +Y
Sbjct: 1141 SFVSKDLSNTTNDFLEFPYKPIY 1163


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 659 ETRRNRPREFSFRSKIVPTVVLKHHFRLEFSVIGNVVRVRWSERRVKITE 510
           E  R+ P+E  F  +   ++  K HF    S    V  V WS+ R+ + E
Sbjct: 285 EIERSLPQELDFTREAKNSIETKEHF-AHLSTSLYVPEVMWSKPRILVME 333


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 654 CLPDHNTRGAPQSDRAAGSGHDRV--SGP 734
           CLPDH T+ A    +  G  +D +  SGP
Sbjct: 596 CLPDHMTKAAVDRIKRTGYDNDSIILSGP 624


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 470 GEEYLTASPVRSNFGYFNESTPPVLLYVQVEAF 372
           G+E L   P  SNFG++++       Y  +E+F
Sbjct: 152 GKELLEEDPKSSNFGFWDQRLGLEWTYKHIESF 184


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 181 FSHNSFVSKHSSNTTHTFLCSWFKTVY-KITLHKTH 77
           +SHN+   K   ++T  F C   +  + KIT+ + H
Sbjct: 226 YSHNAEAEKDGKDSTEAFYCEVCQKFFGKITVFEAH 261


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 273 IPYLAPLLQFLSSRYILDGSN*SKVIFIKADSPTTPLFPSIV 148
           IP+LAPL +++  R I + +   K I +  D+  +    S++
Sbjct: 223 IPFLAPLKKWIKKRNIANNTTKEKNISVDVDADASSQLLSLL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,072
Number of Sequences: 5004
Number of extensions: 62772
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)