Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5683
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1108 + 8758486-8758815,8758913-8758960,8761512-8761664,876... 52 6e-07
11_06_0545 + 24839536-24843421,24843871-24844310 29 3.9
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897... 29 3.9
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 29 3.9
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555... 29 5.2
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292... 29 5.2
06_03_0455 + 20978658-20978677,20979104-20979608 29 5.2
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 29 5.2
02_01_0393 - 2863335-2864534 29 5.2
08_02_0366 - 16301133-16302592,16302702-16302750 28 6.9
04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560... 28 6.9
04_03_0631 - 18190195-18190686,18190866-18191066 28 6.9
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 9.1
>01_01_1108 +
8758486-8758815,8758913-8758960,8761512-8761664,
8761749-8761847,8761884-8761991,8762078-8762200,
8763030-8763287
Length = 372
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/73 (36%), Positives = 40/73 (54%)
Frame = +3
Query: 279 GQGMDAGGNNFDSGQQPQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQ 458
G G+ GG G + EL +K LQ + K FY D+K+N RGR++K++E RS
Sbjct: 16 GPGVAGGGGGGGGGGVGGDVELVSKTLQFEHKLFYFDLKENPRGRYLKISE-KTSSTRST 74
Query: 459 IFLAMSTAAEFRD 497
I + ++ A F D
Sbjct: 75 IIVPVAGVAWFLD 87
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +3
Query: 309 FDSGQQPQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIFLAMSTAAE 488
FD + E++ +K L++ +K FY D+ +N+RGRF+KV+E + RS I + ++ E
Sbjct: 89 FDYYIRTDERDAFSKELRLDTKVFYFDIGENKRGRFLKVSEASVNRNRSTIIVPAGSSGE 148
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 619 DLKENSRGRFLRVSQTITRGGPRSQIALPAQGMIEF 726
DL N+RG +LR+S+ G RS I LP G+ +F
Sbjct: 232 DLGSNNRGHYLRISE--VAGADRSSIILPLSGLKQF 265
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 619 DLKENSRGRFLRVSQTITRGGPRSQIALPAQGMIEF 726
DLKEN RGR+L++S+ + RS I +P G+ F
Sbjct: 52 DLKENPRGRYLKISEKTS--STRSTIIVPVAGVAWF 85
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 619 DLKENSRGRFLRVSQ-TITRGGPRSQIALPA 708
D+ EN RGRFL+VS+ ++ R RS I +PA
Sbjct: 115 DIGENKRGRFLKVSEASVNRN--RSTIIVPA 143
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 220 WLKLIKGYLHQSRFSHNSFVSKHSSNTTH--TFLCSWFKTVYKITLHKTHIH 71
++ IKG+LH F+ SF+++ SN FL + K ++ LH H
Sbjct: 206 YIHWIKGFLHMPHFTTESFLTELMSNKADATAFLLEYTKELFGGPLHYLEGH 257
>06_01_1093 -
8970996-8971667,8971756-8971902,8971982-8972118,
8972343-8972612,8972731-8972868,8974965-8975394
Length = 597
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 193 HQSRFSHNSFVSKHSSNTTHTF-LCSW 116
H F+ NSF+S+H S++T F L SW
Sbjct: 484 HSKSFAVNSFLSRHDSSSTVDFKLLSW 510
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -3
Query: 249 QFLSSRYILDGSN*SKVIFIKADSPTTPLFPSIVVTQHTLFFVLGSRLYIK*HYT 85
Q L + ++ ++ KV++ DSPT L P+ +T T V + LY+ HYT
Sbjct: 124 QLLDTGNLVMKNSSGKVVWQSFDSPTDTLLPTQKITAATK-LVSTTGLYVPGHYT 177
>11_01_0680 -
5554012-5554028,5555525-5555678,5555790-5555951,
5556130-5557148,5559808-5559835,5560996-5561079,
5561442-5561654,5562267-5562569
Length = 659
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 511 KLDRWSRNSAAVDMARNI*LRLPSAPISATLMNLPLL 401
++DRW R++A + AR + LRL + + L NL ++
Sbjct: 40 RVDRWFRHAAVMCQARVLQLRLAPSGVQLALDNLAIV 76
>11_01_0387 +
2922208-2922704,2922956-2923088,2923487-2923549,
2923564-2923680,2925040-2925399
Length = 389
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 279 GQGMDAGGNNFDSG-QQPQEQELATKMLQIQSKRFYLDVKQNR 404
GQ + GN+F+ G QQ Q+Q++ T Q Q + YL Q R
Sbjct: 319 GQVPNMNGNSFNGGLQQQQQQQMPTYFSQ-QQQMHYLSGHQGR 360
>06_03_0455 + 20978658-20978677,20979104-20979608
Length = 174
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 279 GQGMDAGGNNFDSGQQPQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRR 452
G+G +AGG +G +P+ + A + +R RR R + AE ADGRR
Sbjct: 44 GRGSEAGGGQRAAGAEPRPEAGAKARPAVGGRR-------GRRRRRVVGAEAAADGRR 94
>02_05_1240 +
35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 609 YYFGSERELPRAVPPCLPDHNTRGAPQSDRAAGSGHDRVSGPTD 740
YY+ +E PR PP + + R A + +G DR P+D
Sbjct: 95 YYYSNEHLNPRLPPPMVSKEDWRVAQRVQAVSGGVGDRRRRPSD 138
>02_01_0393 - 2863335-2864534
Length = 399
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 217 LKLIKGYLHQSRFSHNSFVSKHSSNTTHTF 128
L L++G L +S FSHN+F++ + F
Sbjct: 354 LNLVRGCLQRSAFSHNTFINSKTDQMQAKF 383
>08_02_0366 - 16301133-16302592,16302702-16302750
Length = 502
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 375 RFYLDVKQNRRGRFIKVAEIGADGR-----RSQIFLAMSTAAEFRDHLSSFSDFYSSL 533
R LDVK +RRG ++V + DG R+ + L S + H++++ F S L
Sbjct: 334 RSILDVKVSRRGGALQVPRLSIDGETWRLLRNLMALEQSNPSAAGSHVTAYCVFMSQL 391
>04_04_0990 -
29955207-29955551,29955639-29955813,29955887-29956017,
29956317-29956436,29956908-29956984,29957070-29957316,
29957413-29957569,29958191-29958309,29958421-29958555,
29958636-29958921,29959009-29959211,29959732-29959881,
29960084-29960266,29960931-29961278
Length = 891
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -1
Query: 614 IVPTVVLKHHFR----LEFSVIGNVVRVRWSERRVKITETGQVVTELGSC*HGEEYLTAS 447
+VP+VVLK H R +EFS + V +R VKI GSC E T+S
Sbjct: 539 LVPSVVLKGHKRGIWSVEFSPVEQCVITSSGDRTVKIWAVAD-----GSCLKTFEGHTSS 593
Query: 446 PVRSNF 429
+R++F
Sbjct: 594 VLRASF 599
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 98 NNTTQDSHSLHYDVKHLWHNYVLDTENKGQCC 3
NN Q S + H D++ H+++ D E KG C
Sbjct: 163 NNPVQHSRTKHIDIR---HHFLRDHETKGDIC 191
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -3
Query: 741 GQWAPKLDHALSRQRDLTAGPPACYGLGDTEEPPAGVLFQIQNSTDGCP*ASFP 580
GQWAP+ A + A PP YG + P G + DG S+P
Sbjct: 501 GQWAPR--GAPAGDGTYQAPPPTSYGPPSQQPPAYGQTYGPTTGPDGYSQQSYP 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,666,613
Number of Sequences: 37544
Number of extensions: 469741
Number of successful extensions: 1325
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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