Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5681
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 34 0.055
08_02_0351 - 16138147-16138187,16138328-16138480,16138684-161387... 31 0.51
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 30 0.90
08_02_0345 - 16057614-16057654,16057797-16057949,16058165-160582... 30 1.2
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 29 2.1
06_03_1210 + 28442253-28442967,28443338-28443405 29 2.1
11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918... 29 2.7
03_05_0577 - 25777457-25778155 29 2.7
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 29 2.7
05_04_0259 + 19494629-19495394,19495408-19495949 28 3.6
09_03_0183 - 13198005-13198024,13199044-13199506 28 4.8
05_01_0587 + 5273650-5273740,5273861-5273924,5274001-5274302,527... 28 4.8
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 27 8.4
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 34.3 bits (75), Expect = 0.055
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 374 CALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 466
C CSG G C G C C+ Y G C+ P+
Sbjct: 266 CINQCSGHGHCRGGFCQCDGGYFGIDCSMPS 296
>08_02_0351 -
16138147-16138187,16138328-16138480,16138684-16138778,
16139683-16139764,16142564-16142639,16143448-16143563,
16144260-16144349,16144438-16144453
Length = 222
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 186 SASNTHRYTHKKKTQTKKRVPSDKTSSQKKKTANQFDY 73
S S Y + T RVP+ + S K KTA+QF Y
Sbjct: 149 SQSTASSYHNGSSKSTTGRVPAQQYSDYKSKTADQFSY 186
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 30.3 bits (65), Expect = 0.90
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 374 CALSCSGRGDCM-NGTCLCEIRYSGEGCA 457
C C+G G C NG C CE ++G C+
Sbjct: 568 CPAKCTGHGICKANGICECESGWTGIDCS 596
>08_02_0345 -
16057614-16057654,16057797-16057949,16058165-16058263,
16058395-16058413
Length = 103
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 186 SASNTHRYTHKKKTQTKKRVPSDKTSSQKKKTANQFDY 73
S S Y + T RVP+ + S K KTA+Q+ Y
Sbjct: 30 SQSTASSYHNGSSKSTTGRVPAQQYSDYKSKTADQYSY 67
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +2
Query: 371 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPNLPYHACVG 490
GC G G C G C + G G A P + +G
Sbjct: 82 GCVFDADGAGVCQTGDCGGRVECRGAGAAPPATLFEVTLG 121
>06_03_1210 + 28442253-28442967,28443338-28443405
Length = 260
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 371 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 463
GC+ +GRG C G C + +G G A P
Sbjct: 79 GCSFDAAGRGRCATGDCGGALYCNGAGGAPP 109
>11_08_0089 -
28288129-28288832,28290702-28290831,28291563-28291856,
28292000-28292098,28292199-28292285,28292524-28292805
Length = 531
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 371 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGP 463
GC+ GRG C G C +R +G A P
Sbjct: 362 GCSFDSRGRGSCATGDCGGVLRCNGAAGATP 392
>03_05_0577 - 25777457-25778155
Length = 232
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 371 GCALSCSGRGDCMNGTCLCEIRYSGEGCAGPN 466
GC SG G C G C ++R + G A PN
Sbjct: 74 GCGFDGSGNGQCQTGDCGGKLRCTAYG-AAPN 104
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 492 PPTHA*YGRLGPAHP---SPEYRISQRQVPFMQSP 397
PPT +GRL PAHP +P R+S+ P P
Sbjct: 41 PPTWLPHGRLSPAHPLPFAPPRRLSRPPPPATSLP 75
>05_04_0259 + 19494629-19495394,19495408-19495949
Length = 435
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +2
Query: 359 AKGAGCALSCSGRGD--CMNGTC 421
AK A CA CSG C+N TC
Sbjct: 102 AKSAACATGCSGAASPGCLNDTC 124
>09_03_0183 - 13198005-13198024,13199044-13199506
Length = 160
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 379 AQLQRPGRLHERHLSLRDPVLGRGMRRT 462
A ++ GR H RHL LR G MRRT
Sbjct: 5 AVMRAEGRHHVRHLLLRSHHCGPSMRRT 32
>05_01_0587 +
5273650-5273740,5273861-5273924,5274001-5274302,
5274399-5274570,5274654-5274717,5274809-5274847
Length = 243
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 305 RNMRSLLAYYADAVMSVAAKGAGCALSCSGRGDCMNG 415
R R LLA D M+ AA A SC+G + + G
Sbjct: 145 RLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAG 181
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 159 HKKKTQTKKRVPSDKTSSQKKKTANQFDY*I*NLKIIQASDAARLP 22
HK K T PS TS K + N+F + LK + D LP
Sbjct: 287 HKTKDMTDSTGPSLPTSRSKSASQNRFSIEVVPLKYRDSVDEETLP 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,774
Number of Sequences: 37544
Number of extensions: 187527
Number of successful extensions: 718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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