Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5680
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    30   0.32 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   1.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   3.0  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   3.0  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 377 YNSDVLKDIGKDTDAVNRYED--ITVLRNGQLVNLKHKTAVKMPFGSQDLIDNGNSAVTN 550
           YNSD   D+G D D ++ Y+D  +  L +  +    H  ++ + F    L D  N A  N
Sbjct: 303 YNSDASYDLGPDIDEIDSYDDAELNPLYSWDVTESNH--SINIWFDFFTLGDGANYAEIN 360

Query: 551 D 553
           D
Sbjct: 361 D 361


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 194  FIICVINSMFISVVIQLFFFDTPIAIFELEFLVKLFRCCL*NRLFSI 54
            FI CV+ S++  ++IQLF F       E + L   F C + N L  +
Sbjct: 909  FISCVLISVYQGLIIQLFTFYLIGFEEEGKMLAVCFSCLIFNELIMV 955


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 64  YLVSNLRRSANRFWGYF 14
           Y ++NL+R+A  FW YF
Sbjct: 639 YFLTNLKRTAGGFWTYF 655


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 545 SPHYCHCRSGPENQMAFSQPFCASSSPID-RSSEPLCLRNDSQRPYLYRYLLAH 387
           +PH CH  S P+N      P   + SPID   + P    N+    Y  RY L +
Sbjct: 569 APHNCH--SVPQNSSYPRPPMQVNRSPIDSMQTIPHANFNEMHNAYSSRYPLKY 620


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 296 LCDNRSGNLLETKNVSREKNLLSIEEEYNSDVLKDIGKD 412
           LC+N+S N  + + ++R   +   ++EYNS +  D   D
Sbjct: 419 LCNNQSFNSCQLQKITRGYWISLQQKEYNSRIYVDTVAD 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,102
Number of Sequences: 5004
Number of extensions: 65545
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)