Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5680
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0169 - 27172182-27172361,27172552-27172889,27172983-271734... 30 2.4
03_05_0179 - 21583234-21584336,21586274-21586358,21586665-215867... 29 3.1
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 29 4.1
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 29 4.1
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704... 28 7.2
08_02_0921 - 22640125-22640268,22640349-22640423,22640496-226407... 28 7.2
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 28 7.2
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 28 7.2
11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872 28 9.5
06_03_0222 - 18378892-18378992,18379106-18379174,18379356-18379593 28 9.5
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 28 9.5
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 28 9.5
02_02_0025 + 6183328-6186127,6186265-6186623 28 9.5
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 28 9.5
>01_06_0169 -
27172182-27172361,27172552-27172889,27172983-27173426,
27174731-27174836,27175401-27175495,27175802-27175958
Length = 439
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 476 KHKTAVKMPFGSQDLIDNGNSAVTNDRLNSNLPVKSKFFDEIDELIPQ 619
K T V + +IDN V ++N+ +P++S F D+ DE +PQ
Sbjct: 360 KDLTVVGVDLAKVVIIDN-TPQVFQLQVNNGIPIESWFSDDSDEALPQ 406
>03_05_0179 -
21583234-21584336,21586274-21586358,21586665-21586713,
21586801-21586874,21586958-21587050,21587120-21587174,
21587348-21587421,21587702-21587814,21587911-21588168,
21588915-21589012,21589139-21589256,21589754-21589848,
21590001-21590159,21590336-21590525,21590881-21591021,
21591142-21591176,21591659-21591699
Length = 926
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Frame = -3
Query: 713 SRRSTGPAASR-LRARRICSARTGISRRDACRFAGSIRRSHRKT*ISLVNSN*ACHSSPH 537
++ +TGP S L+ ++I S G A G RR H +
Sbjct: 151 TKSTTGPQKSNNLQNKKIKSREDGREPEAAELRRGERRRDHEVVFAAAARDPPTLQRPDF 210
Query: 536 YC-----HCRSGPENQMAFSQPFCASSSPIDRSSEPLCLRNDSQR 417
C H + EN+M AS S +D+S +PL ++ D +R
Sbjct: 211 DCVRQNKHPNANTENEMTGGDLEKASGSLLDQSKQPLNIKRDRRR 255
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 740 SIDAARP-RSSRRSTGPAASRLRARRICSARTGISRRDACRFAGSIRRSHRKT*ISLVNS 564
S+D +R R + T + ++ RR+ A+ G RR R++ + ++ + ++ S
Sbjct: 291 SMDKSRAARKKKAKTYKSPKKVEKRRVVEAKDGDPRRGKDRWSAERYAAAERSLLDIMRS 350
Query: 563 N*ACHSSP 540
+ AC +P
Sbjct: 351 HGACFGAP 358
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 742 SRSTQHAPDHPAGAQVQRLPASEHAGYAQPARVSRAAMLAGLRDQFVDLIEKL 584
S S P +G+ QR + + + QP+ A ++A L+D+ VD +++L
Sbjct: 68 SSSHPSLPSSSSGSPHQRASDNPQSLHGQPSPAEAAGIIARLKDKSVDDLQRL 120
>08_02_1053 -
23968372-23968442,23969245-23969294,23970396-23970457,
23970527-23970709,23970737-23970901,23972235-23972408
Length = 234
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 741 LDRRSTPQIIPPEHRSSGFPP--PSTQDMLSPHG 646
+ RR ++ PP H SS +PP P+ + P+G
Sbjct: 1 MSRRRKREVAPPPHTSSSYPPGVPTLSAVPYPYG 34
>08_02_0921 -
22640125-22640268,22640349-22640423,22640496-22640757,
22642286-22642578,22642609-22642812,22643216-22643901,
22643958-22644033
Length = 579
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = +2
Query: 254 KIIIVLSIFDGSLVLCDNRSGNLLETKNVSREKNLLSIEEEYNSDVLKDIGKDTDAVNRY 433
+++ VLS++ S V C N + E VS + ++ + E ++ DT +VN Y
Sbjct: 376 RVLRVLSVYPSSGVTCSNEQAFITEHPRVSPDAQVIFMNRESANNGY----MDTPSVN-Y 430
Query: 434 EDITVLRNGQLVNLKH 481
+ + R G ++L H
Sbjct: 431 K-LETTRTGNWIDLAH 445
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 371 EEYNSDVLKDIGKDTDAVNRYEDITVLRNGQLVNL 475
E+Y + D+G ++DAV R +DI R+G + NL
Sbjct: 21 EKYRPTRVADVGGNSDAVARLQDIA--RDGNMPNL 53
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 737 IDAARPR-SSRRSTGPAASRLRARRICSARTGISRRDACRFAGSIRRS 597
I + PR ++RRS + RL R I R G SRR R A RR+
Sbjct: 588 IPSRSPRKNTRRSISRSPVRLSKRSISPVRGGRSRRSVSRSASPPRRA 635
>11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872
Length = 453
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -1
Query: 751 SVVSRSTQHAPDHPAGAQVQRLPASEHAGYAQPARVSRAAMLAGLRDQFVDLIE 590
+V +R T+H D P + R+P + A P R + L D VD E
Sbjct: 298 AVWTRRTKHPADDPVRQRRARVPQPDGIRAAPPGRRNDVTEFVYLMDNLVDTAE 351
>06_03_0222 - 18378892-18378992,18379106-18379174,18379356-18379593
Length = 135
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 683 RLRARRICSARTGISRRDACRFAGSIRRSHRK-T*ISLVNSN*ACHSSPHYCHCRSGPEN 507
++ A+ C + T + ++CRFAG R + K + +V+ N C P Y H PE
Sbjct: 24 QVEAKSCCPSTTARNVYNSCRFAGGSRNTCAKLSGCKIVDGN--C--EPPYVHHTLHPEA 79
Query: 506 QMAFSQPFC 480
+ + FC
Sbjct: 80 EESEVVDFC 88
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 630 IAARDTRAG*AYPACSEAGSRWTCAPAG*SGACC 731
+ R+ AG + PA SEA S W+ + +CC
Sbjct: 1002 VPTREQEAGGSLPASSEAFSAWSAQYSDLDDSCC 1035
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 720 QIIPPEHRSS--GFPPPSTQDMLSPHGYLAPRCLQVCGINSSISSKNLDFT 574
++ PP H G PPP++ +L P+GY + R + KN+ FT
Sbjct: 100 KVPPPLHTVDPPGSPPPASI-LLEPYGYFSDRTNHTTARGLTRGGKNIVFT 149
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 461 QLVNLKHKT-AVKMPFGSQDLIDNGNSAVTNDRLNSNLP 574
Q ++L H + A +P LI+ G+ +++N+RL SN+P
Sbjct: 539 QSLDLSHNSFAGPIPLEIGGLINLGSLSISNNRLTSNIP 577
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 727 HAPDHPAGAQVQRLPASEHAGYAQPARVSRAAMLA 623
HAP PA A RLP G P + AA A
Sbjct: 39 HAPSSPAAASPSRLPLWRSTGSLLPVSAAAAAAAA 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,667,648
Number of Sequences: 37544
Number of extensions: 422663
Number of successful extensions: 1647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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