Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5679
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    32   0.21 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    32   0.21 
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    27   7.8  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 424 IGRIGYRAPPRVFFFFFYIGDVDS 353
           IG  G+ APP VF FFF++G  +S
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNS 371


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 424 IGRIGYRAPPRVFFFFFYIGDVDS 353
           IG  G+ APP VF FFF++G  +S
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNS 369


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   CMALCVSYY*TNWYFLLLLPGKF 70
           C A+CVS   TN    +LLPG +
Sbjct: 104 CQAMCVSVLATNRLSAMLLPGSY 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,992
Number of Sequences: 27780
Number of extensions: 157661
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)