Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5679
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   4.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 132 SLNCRIDLRLLLRHTVKVLAKN 67
           SL C  + RLL R  ++V+AKN
Sbjct: 324 SLACWNENRLLDRRNIEVVAKN 345


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 NYNQAYTFNLPKPIHNKDRKIY-FFIVN 286
           NYN  Y  N     +N  +K+Y  +I+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 NYNQAYTFNLPKPIHNKDRKIY-FFIVN 286
           NYN  Y  N     +N  +K+Y  +I+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 197 Y*INYNQAYTFNLPKPIHNKDRKIYFFIVNKYLYTVSRARPIY 325
           Y  N N     N     +N  +K+Y+ I+N     V    PIY
Sbjct: 331 YNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIY 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,970
Number of Sequences: 438
Number of extensions: 2186
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)